Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq43997 118 9e-22 seq43996 109 5e-19 seq33280 93.3 4e-14 seq61479 91.5 1e-13 seq8514 91.5 1e-13 >seq43997 Length=5328 Score = 118 bits (130), Expect = 9e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| ||||| | || || ||| | || || | || || || | || Sbjct 5295 CATGCAGATATTTGTTAAAACTCTTACTGGGAAAACTATAACTCTTGATGTTGA-GTCAT 5237 Query 25234 C-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | || || || || | || ||| ||| ||| ||||| |||||||| || || |||| Sbjct 5236 CTGACACAATTGAAAACGTTAAATCAAAGATTCAGGATAAGGAGGGTATTCCTCCTGATC 5177 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 ||||||| || || | | ||||| || ||||| |||| |||| | | |||||||||| Sbjct 5176 AGCAAAGGCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGAAGAACTTTGAGCGATTACA 5117 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||| |||||||| || | ||| | || ||| ||||||| || || Sbjct 5116 ATATTCAGAAAGAATCAACTTTGCATCTGGTATTACGATTGAGGGGTGG 5068 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| ||||| | || || ||| | || || | || || || | Sbjct 4839 CATGCAGATATTTGTGAAAACCCTCACTGGGAAAACAATAACCCTGGACGTTGAGTCTTC 4780 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || ||| | || ||| |||||| ||||| |||||||| || || ||||| Sbjct 4779 TGATACGATTGAGAACGTTAAAACGAAAATTCAGGATAAGGAGGGTATTCCTCCGGATCA 4720 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || ||| | || | || ||| |||||| | || |||| |||| | ||||| || || Sbjct 4719 ACAGAGATTGATATTCGCCGGGAAACAATTGGAGGATGGAAGAACATTAAGCGACTATAA 4660 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| ||||||||||| | ||||| || | |||||||| ||||| Sbjct 4659 CATTCAGAAAGAATCCACTTTACATTTGGTCCTGAGATTGAGGGGAGG 4612 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || |||||| | || || | || || ||| | Sbjct 5066 ATGCAAATTTTTGTTAAAACTCTTACTGGAAAAACTATAACTCTTGATGTTGAATCATCT 5007 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| ||| ||| ||||| ||||| || || || |||||| Sbjct 5006 GACACAATCGAAAACGTTAAATCAAAGATTCAGGATAAGGAGGGCATTCCTCCTGATCAG 4947 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| || || | | ||||| || ||||| |||| |||| | || ||||| ||| Sbjct 4946 CAAAGGCTTATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGAACCTTGAGTGATTATAAT 4887 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| ||||||||| | ||||| || | | || ||||| || Sbjct 4886 ATACAAAAGGAATCCACCCTGCATTTGGTTCTGCGTTTAAGAGGTGG 4840 >seq43996 Length=5100 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| ||||| | || || ||| | || || | || || || | Sbjct 4839 CATGCAGATATTTGTGAAAACCCTCACTGGGAAAACAATAACCCTGGACGTTGAGTCTTC 4780 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || ||| | || ||| |||||| ||||| |||||||| || || ||||| Sbjct 4779 TGATACGATTGAGAACGTTAAAACGAAAATTCAGGATAAGGAGGGTATTCCTCCGGATCA 4720 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || ||| | || | || ||| |||||| | || |||| |||| | ||||| || || Sbjct 4719 ACAGAGATTGATATTCGCCGGGAAACAATTGGAGGATGGAAGAACATTAAGCGACTATAA 4660 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| ||||||||||| | ||||| || | |||||||| ||||| Sbjct 4659 CATTCAGAAAGAATCCACTTTACATTTGGTCCTGAGATTGAGGGGAGG 4612 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| ||||| | || |||||| | || || | || || ||| | Sbjct 5067 CATGCAGATATTTGTTAAAACTCTTACTGGAAAAACTATAACTCTTGATGTTGAATCATC 5008 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || ||| ||| ||| ||||| ||||| || || || ||||| Sbjct 5007 TGACACAATCGAAAACGTTAAATCAAAGATTCAGGATAAGGAGGGCATTCCTCCTGATCA 4948 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| || || | | ||||| || ||||| |||| |||| | || ||||| || Sbjct 4947 GCAAAGGCTTATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGAACCTTGAGTGATTATAA 4888 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| ||||| ||||||||| | ||||| || | | || ||||| || Sbjct 4887 TATACAAAAGGAATCCACCCTGCATTTGGTTCTGCGTTTAAGAGGTGG 4840 >seq33280 Length=5083 Score = 93.3 bits (102), Expect = 4e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| |||||||||||| | ||||| | || || ||| | Sbjct 177 ATGCAAATTTTTGTTAAAACGTTAACCGGAAAAACCATCACTCTTGACGTTGAATCATCT 118 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| ||||||| || || ||||| || || || |||||| Sbjct 117 GACACCATTGAAAACGTGAAAACAAAAATTCAGGACAAGGAGGGAATTCCTCCTGATCAG 58 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 || ||||| |||| || || ||||| || || |||| |||| | || ||||| Sbjct 57 CAGAGACTTATTTTCGCTGGAAAACAGCTTGAGGATGGGAGAACCTTGAGTGATTA 2 >seq61479 Length=12598 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 110045 ACACGTTTTTCGAAAAAATTAGTTTTGCCCTCGAGAGATATATTATTCATAAACTCGAAA 110104 ||||| ||||| ||||| || || || || || ||||| || || | |||||| || ||| Sbjct 7104 ACACGCTTTTCAAAAAAGTTGGTCTTCCCTTCAAGAGAGATGTTTTCCATAAAATCAAAA 7045 Query 110105 GGATTGACAGTGTTAAAGTGTTTGTCGTAGCCCAATTCGAATAGCAATCGATCCGCCACA 110164 || || || || |||| |||| ||| || | ||| | | | | ||| || ||| Sbjct 7044 GGGTTAACGGTTCCAAAGATTTTGCTGTACCCAAGTTCTATCATGAGCCTATCAGCAACA 6985 Query 110165 AATTCAATATACTCGCACATGGACTGTACGTTCATGCCTAACATGGCAACTGGTAGAGCG 110224 |||||||| || || ||||| || || ||||| || | | ||| || ||||| Sbjct 6984 AATTCAATGTAATCACACATATCCTTCACATTCATTCCAATAAGTTTAACAGGAAGAGCT 6925 Query 110225 GTAGTaaaaaaaTCCTTTTCAATGTCGACAGCCTCTACGAACATACTCAACA 110276 | | ||||| |||||||||| || || || ||| || ||| |||||| Sbjct 6924 TCACTGAAAAATTCCTTTTCAACATCAACCGCATCTTTGATCAT-TTCAACA 6874 >seq8514 Length=8580 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 110045 ACACGTTTTTCGAAAAAATTAGTTTTGCCCTCGAGAGATATATTATTCATAAACTCGAAA 110104 ||||| ||||| ||||| || || || || || ||||| || || | |||||| || ||| Sbjct 5711 ACACGCTTTTCAAAAAAGTTGGTCTTCCCTTCAAGAGAGATGTTTTCCATAAAATCAAAA 5770 Query 110105 GGATTGACAGTGTTAAAGTGTTTGTCGTAGCCCAATTCGAATAGCAATCGATCCGCCACA 110164 || || || || |||| |||| ||| || | ||| | | | | ||| || ||| Sbjct 5771 GGGTTAACGGTTCCAAAGATTTTGCTGTACCCAAGTTCTATCATGAGCCTATCAGCAACA 5830 Query 110165 AATTCAATATACTCGCACATGGACTGTACGTTCATGCCTAACATGGCAACTGGTAGAGCG 110224 |||||||| || || ||||| || || ||||| || | | ||| || ||||| Sbjct 5831 AATTCAATGTAATCACACATATCCTTCACATTCATTCCAATAAGTTTAACAGGAAGAGCT 5890 Query 110225 GTAGTaaaaaaaTCCTTTTCAATGTCGACAGCCTCTACGAACATACTCAACA 110276 | | ||||| |||||||||| || || || ||| || ||| |||||| Sbjct 5891 TCACTGAAAAATTCCTTTTCAACATCAACCGCATCTTTGATCAT-TTCAACA 5941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444699857196480