Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq43996 107 2e-18 seq33280 96.9 3e-15 seq43997 95.1 1e-14 >seq43996 Length=5100 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | ||| | || |||||||| | || |||||||| || || ||||| | Sbjct 4840 CCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTC 4899 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||||| | || || |||||||| |||||||| || | || ||||| || | |||| Sbjct 4900 AAGGTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGA 4959 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||| ||| |||||| || | || | | ||||| ||||| || Sbjct 4960 ATGCCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAACA 5019 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || ||||| || || | |||||| |||||||||||||| Sbjct 5020 TCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAATATCTGCAT 5066 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 35519 AACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGC 35578 || |||| ||||||||||| || || || |||||||| || ||| || |||| Sbjct 4621 AATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTTAATGTTCTT 4680 Query 35579 TCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCC 35638 | || |||| || || || || |||||||| | ||| || |||| ||||| | |||| Sbjct 4681 CCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGAATACCCTCC 4740 Query 35639 TTGTCCATGATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCCACCTCCACCGT 35697 || ||| ||| ||| | || | ||| | | ||| || || || || |||| || Sbjct 4741 TTATCC-TGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACGTCCAGGGT 4799 Query 35698 GATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || || | |||||||||||||||||||| Sbjct 4800 TATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 >seq33280 Length=5083 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 35533 ATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTG 35592 ||||| ||| |||||||||||| || || ||| ||||| | | | || || | || Sbjct 202 ATGTAGAGTAGACTCCTTTTGAATATTATAGTCGCTTAAGGTCCTCCCATCTTCTAATTG 261 Query 35593 CTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 |||||| ||||| || | | ||||||||| | ||||| | ||||||| | ||| || Sbjct 262 CTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGAATACCTTCCTTGT-CTTGAATTT 320 Query 35653 TTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCG 35711 | | || | | | | | |||||| || || || || | || || || ||||| | Sbjct 321 TAGATTTAACATTCTCAATCGTGTCACTGCTCTCAACATCAAGAGTAATAGTCTTACCAG 380 Query 35712 TCAAAGTTTTCACAAATATCTGCATTC 35738 ||||||| ||||||||||| ||||||| Sbjct 381 TCAAAGTCTTCACAAATATTTGCATTC 407 >seq43997 Length=5328 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 35519 AACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGC 35578 || |||| ||||||||||| || || || |||||||| || ||| || |||| Sbjct 4621 AATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTTAATGTTCTT 4680 Query 35579 TCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCC 35638 | || |||| || || || || |||||||| | ||| || |||| ||||| | |||| Sbjct 4681 CCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGAATACCCTCC 4740 Query 35639 TTGTCCATGATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCCACCTCCACCGT 35697 || ||| ||| ||| | || | ||| | | ||| || || || || |||| || Sbjct 4741 TTATCC-TGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACGTCCAGGGT 4799 Query 35698 GATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || || | |||||||||||||||||||| Sbjct 4800 TATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 35525 AACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCG 35584 || |||| ||| || || || || ||||| ||||||||| ||| |||| | || Sbjct 5083 AATACCAGATGCAAAGTTGATTCTTTCTGAATATTGTAATCGCTCAAAGTTCTTCCATCC 5142 Query 35585 TCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 || |||||||| || ||||| || | || ||||| || | ||||| | |||||| ||| Sbjct 5143 TCGAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGATCAGGAGGAATACCCTCCTTATCC 5202 Query 35645 ATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTT 35704 |||||| || | || | | ||||| || || || || | || || ||| Sbjct 5203 TGAATCTTTGATTTAACGTTTTCAATTGTGTCAGATGACTCAACATCAAGAGTTATAGTT 5262 Query 35705 TTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || | |||||| |||||||||||||| Sbjct 5263 TTCCCAGTAAGAGTTTTAACAAATATCTGCAT 5294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450394005283120