Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq43997 122 7e-23 seq43996 111 1e-19 seq54562 95.1 1e-14 seq39983 95.1 1e-14 seq34305 95.1 1e-14 seq31035 95.1 1e-14 seq31034 95.1 1e-14 seq33280 89.7 4e-13 >seq43997 Length=5328 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| || ||||||| ||| || || || ||||| ||||||||||| |||||| Sbjct 5068 CCACCCCTCAATCGTAATACCAGATGCAAAGTTGATTCTTTCTGAATATTGTAATCGCTC 5127 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | || |||||||| || || || | || || | || ||||| || || Sbjct 5128 AAAGTTCTTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGATCAGGAGGA 5187 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| ||||| ||||| ||| | | |||| | ||||| | | ||||| Sbjct 5188 ATACCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCAATTGTGTCAGATGACTCAACA 5247 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||||||||| ||| || || |||||||| ||||| || ||||| Sbjct 5248 TCAAGAGTTATAGTTTTCCCAGTAAGAGTTTTAACAAATATCTGCAT 5294 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC-T 27079 ||||| | ||| | || ||||||||||| || || ||||| ||||| || ||||||| | Sbjct 4612 CCTCCCCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTT 4671 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||||| | | || || | ||||| |||||| | || | | |||||||||||| || Sbjct 4672 AATGTT-CTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGG 4730 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| ||||| || || |||| | | | || | || || | | ||||| Sbjct 4731 AATACCCTCCTTATCCTGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAAC 4790 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| | ||| || || || ||||||||||| || ||||| Sbjct 4791 GTCCAGGGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 >seq43996 Length=5100 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC-T 27079 ||||| | ||| | || ||||||||||| || || ||||| ||||| || ||||||| | Sbjct 4612 CCTCCCCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTT 4671 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||||| | | || || | ||||| |||||| | || | | |||||||||||| || Sbjct 4672 AATGTT-CTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGG 4730 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| ||||| || || |||| | | | || | || || | | ||||| Sbjct 4731 AATACCCTCCTTATCCTGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAAC 4790 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| | ||| || || || ||||||||||| || ||||| Sbjct 4791 GTCCAGGGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 >seq54562 Length=4898 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 131644 TTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTT 131703 |||||||| |||||||| ||||| | | ||| || ||||| |||| ||||||||| | Sbjct 3668 TTCAACTCTTTTCATAAATAAATCAGAAATCCACAAGGCGTAAAACAAGTCTCTAGCTCT 3727 Query 131704 TTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCA 131763 | ||||||| | |||| | ||||| | | | |||||| | ||||| ||||||||||| Sbjct 3728 TATCTCTTCATTTCCCACATTTTTTCTTAGCTCTAAAAATGCAAAAATATCCGCATGCCA 3787 Query 131764 GGGTTCCAAATA 131775 || || | ||| Sbjct 3788 TGGCTCAAGATA 3799 >seq39983 Length=4877 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 131644 TTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTT 131703 |||||||| |||||||| ||||| | | ||| || ||||| |||| ||||||||| | Sbjct 3647 TTCAACTCTTTTCATAAATAAATCAGAAATCCACAAGGCGTAAAACAAGTCTCTAGCTCT 3706 Query 131704 TTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCA 131763 | ||||||| | |||| | ||||| | | | |||||| | ||||| ||||||||||| Sbjct 3707 TATCTCTTCATTTCCCACATTTTTTCTTAGCTCTAAAAATGCAAAAATATCCGCATGCCA 3766 Query 131764 GGGTTCCAAATA 131775 || || | ||| Sbjct 3767 TGGCTCAAGATA 3778 >seq34305 Length=4887 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 131644 TTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTT 131703 |||||||| |||||||| ||||| | | ||| || ||||| |||| ||||||||| | Sbjct 1305 TTCAACTCTTTTCATAAATAAATCAGAAATCCACAAGGCGTAAAACAAGTCTCTAGCTCT 1246 Query 131704 TTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCA 131763 | ||||||| | |||| | ||||| | | | |||||| | ||||| ||||||||||| Sbjct 1245 TATCTCTTCATTTCCCACATTTTTTCTTAGCTCTAAAAATGCAAAAATATCCGCATGCCA 1186 Query 131764 GGGTTCCAAATA 131775 || || | ||| Sbjct 1185 TGGCTCAAGATA 1174 >seq31035 Length=4879 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 131644 TTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTT 131703 |||||||| |||||||| ||||| | | ||| || ||||| |||| ||||||||| | Sbjct 3583 TTCAACTCTTTTCATAAATAAATCAGAAATCCACAAGGCGTAAAACAAGTCTCTAGCTCT 3642 Query 131704 TTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCA 131763 | ||||||| | |||| | ||||| | | | |||||| | ||||| ||||||||||| Sbjct 3643 TATCTCTTCATTTCCCACATTTTTTCTTAGCTCTAAAAATGCAAAAATATCCGCATGCCA 3702 Query 131764 GGGTTCCAAATA 131775 || || | ||| Sbjct 3703 TGGCTCAAGATA 3714 >seq31034 Length=4877 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 131644 TTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTT 131703 |||||||| |||||||| ||||| | | ||| || ||||| |||| ||||||||| | Sbjct 1231 TTCAACTCTTTTCATAAATAAATCAGAAATCCACAAGGCGTAAAACAAGTCTCTAGCTCT 1172 Query 131704 TTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCA 131763 | ||||||| | |||| | ||||| | | | |||||| | ||||| ||||||||||| Sbjct 1171 TATCTCTTCATTTCCCACATTTTTTCTTAGCTCTAAAAATGCAAAAATATCCGCATGCCA 1112 Query 131764 GGGTTCCAAATA 131775 || || | ||| Sbjct 1111 TGGCTCAAGATA 1100 >seq33280 Length=5083 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| || | || | ||||| ||||| || ||||||||||| |||||||| Sbjct 179 CCACCTCTCAATCGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATATTATAGTCGCTT 238 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | | ||||| | || ||||| || |||| || | ||| || || || || Sbjct 239 AAGGTCCTCCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGA 298 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || || || || || ||| | | || | ||||| || ||||| Sbjct 299 ATACCTTCCTTGTCTTGAATTTTAGATTTAACATTCTCAATCGTGTCACTGCTCTCAACA 358 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| |||| || || |||| ||| |||||||| |||||||| Sbjct 359 TCAAGAGTAATAGTCTTACCAGTCAAAGTCTTCACAAATATTTGCAT 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424567144336368