Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq33280 181 1e-40 seq43997 149 7e-31 seq43996 143 3e-29 >seq33280 Length=5083 Score = 181 bits (200), Expect = 1e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| | || || ||||||||||||||||| |||||| | Sbjct 406 AATGCAAATATTTGTGAAGACTTTGACTGGTAAGACTATTACTCTTGATGTTGAGAGCAG 347 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| ||| | || |||||||||| |||||||| || |||||||||||||| Sbjct 346 TGACACGATTGAGAATGTTAAATCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCA 287 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || |||||||||||||||||| | || |||| | ||| || |||||||| Sbjct 286 GCAGAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGGAGGACCTTAAGCGACTATAA 227 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | | |||||||| || ||||| ||||| || Sbjct 226 TATTCAAAAGGAGTCTACTCTACATCTTGT 197 Score = 143 bits (158), Expect = 3e-29 Identities = 126/157 (80%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || ||| | ||||| || || || |||||||| ||||| ||| | Sbjct 177 ATGCAAATTTTTGTTAAAACGTTAACCGGAAAAACCATCACTCTTGACGTTGAATCATCT 118 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| |||| | ||||||||||||||||||||||||||||| || ||| Sbjct 117 GACACCATTGAAAACGTGAAAACAAAAATTCAGGACAAGGAGGGAATTCCTCCTGATCAG 58 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 ||| | || ||||| ||||| || || || ||||||| Sbjct 57 CAGAGACTTATTTTCGCTGGAAAACAGCTTGAGGATG 21 >seq43997 Length=5328 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || ||||| || || ||||| |||||||| ||||| ||| | Sbjct 5066 ATGCAAATTTTTGTTAAAACTCTTACTGGAAAAACTATAACTCTTGATGTTGAATCATCT 5007 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || | || |||||||| |||||||| |||||||| || ||| Sbjct 5006 GACACAATCGAAAACGTTAAATCAAAGATTCAGGATAAGGAGGGCATTCCTCCTGATCAG 4947 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || ||||| || ||||| |||||||||| | ||| | || |||||| Sbjct 4946 CAAAGGCTTATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGAACCTTGAGTGATTATAAT 4887 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||||||||| || ||| | || ||||| | | ||||| Sbjct 4886 ATACAAAAGGAATCCACCCTGCATTTGGTTCTGCGTTTAAGAGGTGG 4840 Score = 105 bits (116), Expect = 8e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || || || || || || || || || || |||||||| | Sbjct 4838 ATGCAGATATTTGTGAAAACCCTCACTGGGAAAACAATAACCCTGGACGTTGAGTCTTCT 4779 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | || | ||||||||||| |||||||| |||||||| || || Sbjct 4778 GATACGATTGAGAACGTTAAAACGAAAATTCAGGATAAGGAGGGTATTCCTCCGGATCAA 4719 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || || || || ||| | ||||||| | || || |||||||| Sbjct 4718 CAGAGATTGATATTCGCCGGGAAACAATTGGAGGATGGAAGAACATTAAGCGACTATAAC 4659 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | || || ||||||||| | ||| | ||| || Sbjct 4658 ATTCAGAAAGAATCCACTTTACATTTGGTCCTG 4626 >seq43996 Length=5100 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || ||||| || || ||||| |||||||| ||||| ||| | Sbjct 5066 ATGCAGATATTTGTTAAAACTCTTACTGGAAAAACTATAACTCTTGATGTTGAATCATCT 5007 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || | || |||||||| |||||||| |||||||| || ||| Sbjct 5006 GACACAATCGAAAACGTTAAATCAAAGATTCAGGATAAGGAGGGCATTCCTCCTGATCAG 4947 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || ||||| || ||||| |||||||||| | ||| | || |||||| Sbjct 4946 CAAAGGCTTATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGAACCTTGAGTGATTATAAT 4887 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||||||||| || ||| | || ||||| | | ||||| Sbjct 4886 ATACAAAAGGAATCCACCCTGCATTTGGTTCTGCGTTTAAGAGGTGG 4840 Score = 105 bits (116), Expect = 8e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || || || || || || || || || || |||||||| | Sbjct 4838 ATGCAGATATTTGTGAAAACCCTCACTGGGAAAACAATAACCCTGGACGTTGAGTCTTCT 4779 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | || | ||||||||||| |||||||| |||||||| || || Sbjct 4778 GATACGATTGAGAACGTTAAAACGAAAATTCAGGATAAGGAGGGTATTCCTCCGGATCAA 4719 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || || || || ||| | ||||||| | || || |||||||| Sbjct 4718 CAGAGATTGATATTCGCCGGGAAACAATTGGAGGATGGAAGAACATTAAGCGACTATAAC 4659 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | || || ||||||||| | ||| | ||| || Sbjct 4658 ATTCAGAAAGAATCCACTTTACATTTGGTCCTG 4626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569804862603680