Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq43997 113 3e-20 seq43996 113 3e-20 seq33280 93.3 3e-14 >seq43997 Length=5328 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| | |||| || || ||||||||||| || | ||||| | || || Sbjct 4630 ACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTTAATGTTCTTCCATCCTCC 4689 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | |||||| ||||| ||||| || | |||||| ||||| || | |||||||| || || Sbjct 4690 AATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGAATACCCTCCTTATC-CTG 4748 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||| ||||||||| | ||| || || ||| || |||| |||||| ||||| Sbjct 4749 AATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACGTCCAGGGTTATTGTTTT 4808 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || | ||||||||||| ||||||||| Sbjct 4809 CCCAGTGAGGGTTTTCACAAATATCTGCATG 4839 >seq43996 Length=5100 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| | |||| || || ||||||||||| || | ||||| | || || Sbjct 4630 ACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTTAATGTTCTTCCATCCTCC 4689 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | |||||| ||||| ||||| || | |||||| ||||| || | |||||||| || || Sbjct 4690 AATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGAATACCCTCCTTATC-CTG 4748 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||| ||||||||| | ||| || || ||| || |||| |||||| ||||| Sbjct 4749 AATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACGTCCAGGGTTATTGTTTT 4808 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || | ||||||||||| ||||||||| Sbjct 4809 CCCAGTGAGGGTTTTCACAAATATCTGCATG 4839 >seq33280 Length=5083 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | || | || | ||| ||||| |||||||||||| ||||| || Sbjct 179 CCACCTCTCAATCGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATATTATAGTCGCTT 238 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || | | | ||||| | ||| ||||| ||||| || | | ||| ||||| || || Sbjct 239 AAGGTCCTCCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGA 298 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| | |||||| | ||| ||||| |||||| || Sbjct 299 ATACCTTCCTTGTCT-TGAATTTTAGATTTAACATTCTCAATCGTGTCACTGCTCTCAAC 357 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || ||||| || || || |||||||| || ||||| Sbjct 358 ATCAAGAGTAATAGTCTTACCAGTCAAAGTCTTCACAAATATTTGCAT 405 Score = 84.2 bits (92), Expect = 1e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 34543 GTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACT 34602 |||| | | || ||||| ||||| || || || || | | ||| || || || || | | Sbjct 14 GTTCTCCCATCCTCAAGCTGTTTTCCAGCGAAAATAAGTCTCTGCTGATCAGGAGGAATT 73 Query 34603 CCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTC 34661 ||||||||||| ||| ||||||||| ||| | ||| ||||| || || || Sbjct 74 CCCTCCTTGTCC-TGAATTTTTGTTTTCACGTTTTCAATGGTGTCAGATGATTCAACGTC 132 Query 34662 CACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || ||||| |||||||||||||| |||||||| ||||| Sbjct 133 AAGAGTGATGGTTTTTCCGGTTAACGTTTTAACAAAAATTTGCAT 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314457590418962