Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq43997 87.8 1e-12 >seq43997 Length=5328 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/223 (69%), Gaps = 10/223 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| |||||||||||||| ||| ||| || ||||||| ||| | Sbjct 5066 ATGCAAATTTTTGTTAAAACTCTTACTGGAAAAACTATAACTCTTGATGTTGAATCATCT 5007 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| || ||| ||| || || || || || |||| | Sbjct 5006 GAC-----ACAATCGAAAACGTTAAATCAAAGATTCAGGATAAGGAGGGCATTCCTCCTG 4952 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||| || | || ||||| || || || | || || | | | | |||| |||| Sbjct 4951 ATCAGCAAAGGCTTATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGAACCTTGAGTGATT 4892 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 | || || ||||| || ||| ||||||||||| ||||||| Sbjct 4891 ATAATATACAAAAGGAATCCACCCTGCATTTGGTTCTGCGTTT 4849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355554840805278