Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq43996 176 1e-38 seq43997 172 1e-37 seq33280 141 2e-28 >seq43996 Length=5100 Score = 176 bits (194), Expect = 1e-38 Identities = 163/204 (80%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTG 210970 || || ||||| || ||||| || |||||||| | ||||| || ||||||| || ||||| Sbjct 4864 TGCAGGGTGGATTCCTTTTGTATATTATAATCACTCAAGGTTC-TTCCATCCTCGAGCTG 4922 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| || |||||||| | ||| || |||||||||| || ||||| ||||| ||||| Sbjct 4923 CTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGAATGCCCTCCTTATCCTGAATCTT 4982 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 | ||| ||||||||||| |||||||| |||||| || ||||| || || ||||| || Sbjct 4983 TGATTTAACGTTTTCGATTGTGTCAGATGATTCAACATCAAGAGTTATAGTTTTTCCAGT 5042 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| | |||||| Sbjct 5043 AAGAGTTTTAACAAATATCTGCAT 5066 >seq43997 Length=5328 Score = 172 bits (190), Expect = 1e-37 Identities = 162/204 (79%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTG 210970 || || ||||| || ||||| || |||||||| | ||||| || ||||||| || ||||| Sbjct 4864 TGCAGGGTGGATTCCTTTTGTATATTATAATCACTCAAGGTTC-TTCCATCCTCGAGCTG 4922 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| || |||||||| | ||| || |||||||||| || ||||| ||||| ||||| Sbjct 4923 CTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGAATGCCCTCCTTATCCTGAATCTT 4982 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 | ||| ||||||||||| |||||||| |||||| || ||||| || || ||||| || Sbjct 4983 TGATTTAACGTTTTCGATTGTGTCAGATGATTCAACATCAAGAGTTATAGTTTTTCCAGT 5042 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| | ||||| Sbjct 5043 AAGAGTTTTAACAAAAATTTGCAT 5066 Score = 150 bits (166), Expect = 4e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTC 210964 || || || | ||| || ||||| || || || ||||| | ||| | || ||||||| || Sbjct 5086 ACCAGATGCAAAGTTGATTCTTTCTGAATATTGTAATCGCTCAAAGTTC-TTCCATCCTC 5144 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 ||||||||||| || |||||||| | ||| || |||||||||| || ||||| ||||| Sbjct 5145 GAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGATCAGGAGGAATACCCTCCTTATCCTG 5204 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 |||||| ||| |||||||| || |||||||| ||||| || ||||| || || || Sbjct 5205 AATCTTTGATTTAACGTTTTCAATTGTGTCAGATGACTCAACATCAAGAGTTATAGTTTT 5264 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || ||||| | |||||| Sbjct 5265 CCCAGTAAGAGTTTTAACAAATATCTGCAT 5294 >seq33280 Length=5083 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || ||||| ||||| ||||| || ||||| || | |||||| |||||| Sbjct 194 AGAACAAGATGTAGAGTAGACTCCTTTTGAATATTATAGTCGCTTAAGGTCCTCCCATCT 253 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | ||||| || || || ||||| | || ||||| ||||||| ||||||||||| Sbjct 254 TCTAATTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCT 313 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||| || || || || |||||| ||| ||||| || ||||| || ||| Sbjct 314 TGAATTTTAGATTTAACATTCTCAATCGTGTCACTGCTCTCAACATCAAGAGTAATAGTC 373 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || | |||||| ||||| | |||||| Sbjct 374 TTACCAGTCAAAGTCTTCACAAATATTTGCATT 406 Score = 138 bits (152), Expect = 3e-27 Identities = 139/178 (78%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 210938 ATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTT 210996 |||||| | ||||| || | ||||| || ||||| || || ||||| ||||| | || | Sbjct 1 ATAATCACTCAAGGTTC-TCCCATCCTCAAGCTGTTTTCCAGCGAAAATAAGTCTCTGCT 59 Query 210997 GGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAG 211056 | |||||||||| ||| ||||||||||| || ||| |||||||||||| |||||||||| Sbjct 60 GATCAGGAGGAATTCCCTCCTTGTCCTGAATTTTTGTTTTCACGTTTTCAATGGTGTCAG 119 Query 211057 AGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | |||||| || |||||||| || ||||| || | || || ||||| | ||||| Sbjct 120 ATGATTCAACGTCAAGAGTGATGGTTTTTCCGGTTAACGTTTTAACAAAAATTTGCAT 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158098811155610