Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq43997 116 3e-21 seq43996 111 1e-19 >seq43997 Length=5328 Score = 116 bits (128), Expect = 3e-21 Identities = 174/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || ||| |||||||| || | |||||||| || ||| || |||||||| Sbjct 4827 AAATATCTGCATGCCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTAT 4886 Query 39105 ATTATAATC-GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCT 39163 ||||||||| |||| |||| | | || || ||||| ||||||||||| ||||| | | Sbjct 4887 ATTATAATCACTCAAG-GTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTT 4945 Query 39164 GCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG-TCGCCACCGTA 39222 |||| || | || | || ||| || ||| ||| | | || || | || | | | || Sbjct 4946 GCTGATCAGGAGGAATGCCCTCCTTATCC-TGAATCTTTGATTTAACGTTTTCGATTGTG 5004 Query 39223 TCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGC 39282 || || || || || | || ||| ||||||| || || ||||||||||| |||||| Sbjct 5005 TCAGATGATTCAACATCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAAAATTTGC 5064 Query 39283 AT 39284 || Sbjct 5065 AT 5066 >seq43996 Length=5100 Score = 111 bits (122), Expect = 1e-19 Identities = 173/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || ||| |||||||| || | |||||||| || ||| || |||||||| Sbjct 4827 AAATATCTGCATGCCACCTCTTAAACGCAGAACCAAATGCAGGGTGGATTCCTTTTGTAT 4886 Query 39105 ATTATAATC-GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCT 39163 ||||||||| |||| |||| | | || || ||||| ||||||||||| ||||| | | Sbjct 4887 ATTATAATCACTCAAG-GTTCTTCCATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTT 4945 Query 39164 GCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG-TCGCCACCGTA 39222 |||| || | || | || ||| || ||| ||| | | || || | || | | | || Sbjct 4946 GCTGATCAGGAGGAATGCCCTCCTTATCC-TGAATCTTTGATTTAACGTTTTCGATTGTG 5004 Query 39223 TCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGC 39282 || || || || || | || ||| ||||||| || || ||||||||||| || ||| Sbjct 5005 TCAGATGATTCAACATCAAGAGTTATAGTTTTTCCAGTAAGAGTTTTAACAAATATCTGC 5064 Query 39283 AT 39284 || Sbjct 5065 AT 5066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429174359040482