Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq43997 143 2e-29 seq43996 143 2e-29 >seq43997 Length=5328 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || ||||| || || || || ||||| || | Sbjct 4838 ATGCAGATATTTGTGAAAACCCTCACTGGGAAAACAATAACCCTGGACGTTGAGTCTTCT 4779 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| || ||||||| |||||| || || || ||| | || || ||||| Sbjct 4778 GATACGATTGAGAACGTTAAAAC-GAAAATTCAGGATAAGGAGGGTATTCCTCCGGATCA 4720 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || ||||| ||||| |||||| |||| || | | | || ||| |||| || || Sbjct 4719 ACAGAGATTGATATTCGCCGGGAAACAATTGGAGGATGGAAGAACATTAAGCGACTATAA 4660 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || ||||| ||||| |||||||| || | || ||| | ||||| Sbjct 4659 CATTCAGAAAGAATCCACTTTACATTTGGTCCTGAGATTGAGGGGAGG 4612 >seq43996 Length=5100 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || ||||| || || || || ||||| || | Sbjct 4838 ATGCAGATATTTGTGAAAACCCTCACTGGGAAAACAATAACCCTGGACGTTGAGTCTTCT 4779 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| || ||||||| |||||| || || || ||| | || || ||||| Sbjct 4778 GATACGATTGAGAACGTTAAAAC-GAAAATTCAGGATAAGGAGGGTATTCCTCCGGATCA 4720 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || ||||| ||||| |||||| |||| || | | | || ||| |||| || || Sbjct 4719 ACAGAGATTGATATTCGCCGGGAAACAATTGGAGGATGGAAGAACATTAAGCGACTATAA 4660 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || ||||| ||||| |||||||| || | || ||| | ||||| Sbjct 4659 CATTCAGAAAGAATCCACTTTACATTTGGTCCTGAGATTGAGGGGAGG 4612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337717470344312