Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq33280 127 5e-24 >seq33280 Length=5083 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || ||||| || || ||||| | ||| || ||| || || ||||||||| Sbjct 194 AGAACAAGATGTAGAGTAGACTCCTTTTGAATATTATAGTCGCTTAAGGTCCTCCCATCT 253 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| ||||| ||||| || ||||||| || ||||| || |||||||||||||||||| Sbjct 254 TCTAATTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCT 313 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || || ||| || || ||||| | | || || || | || || ||| Sbjct 314 TGAATTTTAGATTTAACATTCTCAATCGTGTCACTGCTCTCAACATCAAGAGTAATAGTC 373 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || |||||||| || | || | ||||||| Sbjct 374 TTACCAGTCAAAGTCTTCACAAATATTTGCATT 406 Score = 114 bits (126), Expect = 3e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 225538 TAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGG 225597 ||||| ||| ||||||||||| || ||||| || |||||||| ||||||| || || Sbjct 2 TAATCACTCAAGGTTCTCCCATCCTCAAGCTGTTTTCCAGCGAAAATAAGTCTCTGCTGA 61 Query 225598 TCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAG 225657 || || ||||| || |||||||| || || ||| ||||| ||| |||||||| || Sbjct 62 TCAGGAGGAATTCCCTCCTTGTCCTGAATTTTTGTTTTCACGTTTTCAATGGTGTCAGAT 121 Query 225658 GTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||| ||||| | ||||| || || || || || ||||| | || | |||||| Sbjct 122 GATTCAACGTCAAGAGTGATGGTTTTTCCGGTTAACGTTTTAACAAAAATTTGCAT 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191447683294316