Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq33280 150 4e-31 seq43997 116 9e-21 seq43996 113 1e-19 >seq33280 Length=5083 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| ||||||||||| ||||| || || || ||| ||| || ||||||||| Sbjct 194 AGAACAAGATGTAGAGTAGACTCCTTTTGAATATTATAGTCGCTTAAGGTCCTCCCATCT 253 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| || || || || ||||| ||||||||||| | | || |||||||| ||| Sbjct 254 TCTAATTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCT 313 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||| ||| |||| | |||| ||||| || |||||||||||||| Sbjct 314 TGAATTTTAGATTTAACATTCTCAATCGTGTCACTGCTCTCAACATCAAGAGTAATAGTC 373 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | ||||||||| || | |||||| Sbjct 374 TTACCAGTCAAAGTCTTCACAAATATTTGCATT 406 Score = 86.0 bits (94), Expect = 1e-11 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 151938 AAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAG 151997 || ||||||||||| || || ||| || ||||| ||||| |||||||| || | | Sbjct 11 AAGGTTCTCCCATCCTCAAGCTGTTTTCCAGCGAAAATAAGTCTCTGCTGATCAGGAGGA 70 Query 151998 ATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACT 152057 ||||| ||||| || ||||||||| ||| || | || | | |||| || || || Sbjct 71 ATTCCCTCCTTGTCCTGAATTTTTGTTTTCACGTTTTCAATGGTGTCAGATGATTCAACG 130 Query 152058 TCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||| || || | || || || || | ||||| Sbjct 131 TCAAGAGTGATGGTTTTTCCGGTTAACGTTTTAACAAAAATTTGCAT 177 >seq43997 Length=5328 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || ||||| | ||| || ||||| || || ||||||||| |||||||| ||||| || Sbjct 5086 ACCAGATGCAAAGTTGATTCTTTCTGAATATTGTAATCGCTCAAAGTTCTTCCATCCTCG 5145 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || || || ||||||||||| ||||| || | | || || ||||| || ||| Sbjct 5146 AGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGATCAGGAGGAATACCCTCCTTATCCTGA 5205 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || ||| ||| || | || | |||| || ||| || |||||||| |||||||| Sbjct 5206 ATCTTTGATTTAACGTTTTCAATTGTGTCAGATGACTCAACATCAAGAGTTATAGTTTTC 5265 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || || | |||||| Sbjct 5266 CCAGTAAGAGTTTTAACAAATATCTGCAT 5294 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| | ||| ||||| | ||| | ||| || ||||| || ||||| || ||| ||| || Sbjct 4617 CCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTTAATGT 4676 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 ||| ||||| || | |||||||||||| || | ||||| || |||| | || || Sbjct 4677 TCTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGAATACC 4736 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || |||||||| ||| || |||| | | || ||| ||| || || || Sbjct 4737 CTCCTTATCCTGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACGTCCAG 4796 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || ||||| || ||||| || | |||||| Sbjct 4797 GGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| || || || || ||||| || || ||||| || ||||| ||||| Sbjct 4855 AGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTCAAGGTTCTTCCATCC 4914 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||||||||| ||||| || | | || || ||||| || Sbjct 4915 TCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGAATGCCCTCCTTATCC 4974 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| ||| || | || | |||| || || || |||||||| |||||| Sbjct 4975 TGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAACATCAAGAGTTATAGTT 5034 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || || | ||||| Sbjct 5035 TTTCCAGTAAGAGTTTTAACAAAAATTTGCAT 5066 >seq43996 Length=5100 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| | ||| ||||| | ||| | ||| || ||||| || ||||| || ||| ||| || Sbjct 4617 CCTCAATCTCAGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTTAATGT 4676 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 ||| ||||| || | |||||||||||| || | ||||| || |||| | || || Sbjct 4677 TCTTCCATCCTCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGAATACC 4736 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || |||||||| ||| || |||| | | || ||| ||| || || || Sbjct 4737 CTCCTTATCCTGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACGTCCAG 4796 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || ||||| || ||||| || | |||||| Sbjct 4797 GGTTATTGTTTTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| || || || || ||||| || || ||||| || ||||| ||||| Sbjct 4855 AGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTCAAGGTTCTTCCATCC 4914 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||||||||| ||||| || | | || || ||||| || Sbjct 4915 TCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGAATGCCCTCCTTATCC 4974 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| ||| || | || | |||| || || || |||||||| |||||| Sbjct 4975 TGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAACATCAAGAGTTATAGTT 5034 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || || | |||||| Sbjct 5035 TTTCCAGTAAGAGTTTTAACAAATATCTGCAT 5066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152772455007294