Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq43997 127 4e-24 seq43996 125 1e-23 seq33280 111 3e-19 >seq43997 Length=5328 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || || | ||||||||| || || |||||| || || ||||| || Sbjct 5067 ACCACCCCTCAATCGTAATACCAGATGCAAAGTTGATTCTTTCTGAATATTGTAATCGCT 5126 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || | |||||||| || || || || |||||||| | | ||| || ||| || Sbjct 5127 CAAAGTTCTTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGATCAGGAGG 5186 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||| || || ||||||| ||| ||| | || || ||||| || | || || Sbjct 5187 AATACCCTCCTTATCCTGAATCTTTGATTTAACGTTTTCAATTGTGTCAGATGACTCAAC 5246 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || || || || | ||| ||||| ||||||||||| Sbjct 5247 ATCAAGAGTTATAGTTTTCCCAGTAAGAGTTTTAACAAATATCTGCAT 5294 Score = 116 bits (128), Expect = 8e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 282888 AGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947 || |||| |||||| ||| |||||| || ||||| ||||| | || | |||||| Sbjct 4627 AGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTTAATGTTCTTCCATCC 4686 Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007 || | |||||||||||| || ||||| | ||||| || |||||||||||||| || Sbjct 4687 TCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGAATACCCTCCTTATCC 4746 Query 283008 TGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTC 283067 || || || | ||| ||| | || || || || |||| || || || || || || || Sbjct 4747 TGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACGTCCAGGGTTATTGTT 4806 Query 283068 TTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || | || || || ||||||||||| Sbjct 4807 TTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 >seq43996 Length=5100 Score = 125 bits (138), Expect = 1e-23 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 282885 CGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCC 282943 || || |||| ||| | ||| ||| ||||| || || || ||| |||| || | || Sbjct 4852 CGCAGAACCAAATGCAGGGTGGATTCCTTTTGTATATTATAATCACTCAAG-GTTCTTCC 4910 Query 282944 ATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTT 283003 |||||| || || || || |||||||| | | ||| || ||| ||||| |||||||| Sbjct 4911 ATCCTCGAGCTGCTTGCCCGCAAAGATAAGCCTTTGCTGATCAGGAGGAATGCCCTCCTT 4970 Query 283004 GTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGAT 283063 || || ||||||| ||| ||| | ||||| ||||| || | ||| || || ||||| || Sbjct 4971 ATCCTGAATCTTTGATTTAACGTTTTCGATTGTGTCAGATGATTCAACATCAAGAGTTAT 5030 Query 283064 CGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || | ||| ||||| ||||||||||| Sbjct 5031 AGTTTTTCCAGTAAGAGTTTTAACAAATATCTGCAT 5066 Score = 116 bits (128), Expect = 8e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 282888 AGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947 || |||| |||||| ||| |||||| || ||||| ||||| | || | |||||| Sbjct 4627 AGGACCAAATGTAAAGTGGATTCTTTCTGAATGTTATAGTCGCTTAATGTTCTTCCATCC 4686 Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007 || | |||||||||||| || ||||| | ||||| || |||||||||||||| || Sbjct 4687 TCCAATTGTTTCCCGGCGAATATCAATCTCTGTTGATCCGGAGGAATACCCTCCTTATCC 4746 Query 283008 TGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTC 283067 || || || | ||| ||| | || || || || |||| || || || || || || || Sbjct 4747 TGAATTTTCGTTTTAACGTTCTCAATCGTATCAGAAGACTCAACGTCCAGGGTTATTGTT 4806 Query 283068 TTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || | || || || ||||||||||| Sbjct 4807 TTCCCAGTGAGGGTTTTCACAAATATCTGCAT 4838 >seq33280 Length=5083 Score = 111 bits (122), Expect = 3e-19 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC- 282931 ||||| | || ||||| || ||||||| || || ||||| || || ||||| || Sbjct 179 CCACCTCTCAATCGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATATTATAGTC-GCT 237 Query 282932 -AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 ||| || | ||||| |||| ||| || || ||||| || | | || ||||| | Sbjct 238 TAAG-GTCCTCCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAG 296 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCG 283049 ||||||| ||||||||||| || || | ||| || | || || |||| | ||| || Sbjct 297 GAATACCTTCCTTGTCTTGAATTTTAGATTTAACATTCTCAATCGTGT-CACTGCTCTCA 355 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||| || |||||||| ||||||||||| || ||||| |||||| Sbjct 356 ACATCAAGAGTAATAGTCTTACCAGTCAAAGTCTTCACAAATATTTGCATT 406 Score = 96.9 bits (106), Expect = 7e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 |||||||| || ||||| || || || || | | || || ||| ||||| |||||| Sbjct 20 CCATCCTCAAGCTGTTTTCCAGCGAAAATAAGTCTCTGCTGATCAGGAGGAATTCCCTCC 79 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||| || || |||| ||| ||| | || || ||||| || | ||| || || |||||| Sbjct 80 TTGTCCTGAATTTTTGTTTTCACGTTTTCAATGGTGTCAGATGATTCAACGTCAAGAGTG 139 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || || || || ||||| || || ||||| Sbjct 140 ATGGTTTTTCCGGTTAACGTTTTAACAAAAATTTGCAT 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045788147809756