Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq61479 120 3e-22 seq8514 120 3e-22 >seq61479 Length=12598 Score = 120 bits (132), Expect = 3e-22 Identities = 312/479 (65%), Gaps = 39/479 (8%) Strand=Plus/Minus Query 23218 TTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTT 23277 |||||||||||| |||||| |||| ||||| || ||||| || || | || || ||| Sbjct 7119 TTTTGATATTCCGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTCAAGAGAGATGTTT 7060 Query 23278 TCCATAAAATCAAATGGATTAGAAGTATTATATACA--GCTTTACATGATAATTCCTTTA 23335 |||||||||||||| || ||| || | | | ||| ||| | ||| | | Sbjct 7059 TCCATAAAATCAAAAGGGTTAACGGTTCCAAAGATTTTGCTGTACCCAAG--TTCTATCA 7002 Query 23336 AAAGCCTATCTGCTACAAATTCAATATATTGACACAT-CAAATCATAGTTTATACCTATT 23394 |||||||| || ||||||||||| || | |||||| ||| | || || || || Sbjct 7001 TGAGCCTATCAGCAACAAATTCAATGTAATCACACATATCCTTCACA-TTCATTCCAATA 6943 Query 23395 AGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATT 23454 ||||| || |||| || ||| || ||| ||||||| ||| |||||||| || Sbjct 6942 AGTTTAACAGGAAGAGCTTCACTGAAAAATTCCTTTTCAACATCAACCGCATCTTTGATC 6883 Query 23455 ATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAAACATGCA 23514 |||| ||||| || ||| |||| || | | || | | |||| | ||| ||| Sbjct 6882 ATTTCAACAACAATGCTTTCGGAAGGTTTATTTATCAACTTACTGAACATAAGACAGGCA 6823 Query 23515 AAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGC 23574 ||||| ||| || |||||||| | ||| || || || ||| | || | ||||||| Sbjct 6822 AAATCTGTATGAAGCCCTTCATCACGACTTATTAACTCGTTACTATGGGTAAGTCCTGGC 6763 Query 23575 ----------------ATTAATCC-----------------TCGTTTTTTAATCCAAAAT 23601 |||||| | ||||| || | ||| || Sbjct 6762 ATGAGACCACTAAATTATTAATACAGTTCCATATTAACCAACCGTTTCTTGAGCCAGAAA 6703 Query 23602 ATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACG 23660 |||||||| ||||| || ||||| || || ||||||||||| ||||| || || | ||| Sbjct 6702 ATTGCAGCGAATGAACCAGAAAAAAATATTCCCTCAACAGCTGCAAATGCAACTACACG 6644 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23688 AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTT 23747 |||||| ||| | ||| | |||||| || ||| | || ||||| || ||||| Sbjct 3986 AATCCAGTTTAGGGCCCATTCAGCCTTTTTCTTGACAGAAGGAAGGGTTTCGATGGCTTT 3927 Query 23748 TAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACAT 23807 || | | || |||||| | ||| | || || |||||||| | ||||| ||||| Sbjct 3926 GAACAACCTATTTCGTTCTTCGATTTCTTTAATGTACGTATCAATCAACAAACTGTACAT 3867 Query 23808 TTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAA 23867 |||||| || |||||||| | ||||| || ||||| || |||||||| ||||| | | Sbjct 3866 TTCAGAGTGGATATTTTCCACCGCAATTTGGAACCCGTAGAAACATCTTGCTTCTGTCGC 3807 Query 23868 TTGAACATCATTAAAAAA 23885 ||||| ||||| || || Sbjct 3806 CTGAACTTCATTCAAGAA 3789 >seq8514 Length=8580 Score = 120 bits (132), Expect = 3e-22 Identities = 312/479 (65%), Gaps = 39/479 (8%) Strand=Plus/Plus Query 23218 TTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTT 23277 |||||||||||| |||||| |||| ||||| || ||||| || || | || || ||| Sbjct 5696 TTTTGATATTCCGAAACACGCTTTTCAAAAAAGTTGGTCTTCCCTTCAAGAGAGATGTTT 5755 Query 23278 TCCATAAAATCAAATGGATTAGAAGTATTATATACA--GCTTTACATGATAATTCCTTTA 23335 |||||||||||||| || ||| || | | | ||| ||| | ||| | | Sbjct 5756 TCCATAAAATCAAAAGGGTTAACGGTTCCAAAGATTTTGCTGTACCCAAG--TTCTATCA 5813 Query 23336 AAAGCCTATCTGCTACAAATTCAATATATTGACACAT-CAAATCATAGTTTATACCTATT 23394 |||||||| || ||||||||||| || | |||||| ||| | || || || || Sbjct 5814 TGAGCCTATCAGCAACAAATTCAATGTAATCACACATATCCTTCACA-TTCATTCCAATA 5872 Query 23395 AGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATT 23454 ||||| || |||| || ||| || ||| ||||||| ||| |||||||| || Sbjct 5873 AGTTTAACAGGAAGAGCTTCACTGAAAAATTCCTTTTCAACATCAACCGCATCTTTGATC 5932 Query 23455 ATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAAACATGCA 23514 |||| ||||| || ||| |||| || | | || | | |||| | ||| ||| Sbjct 5933 ATTTCAACAACAATGCTTTCGGAAGGTTTATTTATCAACTTACTGAACATAAGACAGGCA 5992 Query 23515 AAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGC 23574 ||||| ||| || |||||||| | ||| || || || ||| | || | ||||||| Sbjct 5993 AAATCTGTATGAAGCCCTTCATCACGACTTATTAACTCGTTACTATGGGTAAGTCCTGGC 6052 Query 23575 ----------------ATTAATCC-----------------TCGTTTTTTAATCCAAAAT 23601 |||||| | ||||| || | ||| || Sbjct 6053 ATGAGACCACTAAATTATTAATACAGTTCCATATTAACCAACCGTTTCTTGAGCCAGAAA 6112 Query 23602 ATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACG 23660 |||||||| ||||| || ||||| || || ||||||||||| ||||| || || | ||| Sbjct 6113 ATTGCAGCGAATGAACCAGAAAAAAATATTCCCTCAACAGCTGCAAATGCAACTACACG 6171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521025739999600