Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeromyxa_20zaharoni_20[genbank_20GCA_5F001455285.1_202015-12-02] 70,914 sequences; 173,585,031 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq43997 161 2e-34 seq43996 152 1e-31 seq33280 138 3e-27 >seq43997 Length=5328 Score = 161 bits (178), Expect = 2e-34 Identities = 164/211 (78%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||||| || |||||||| || || || || || ||| || ||| Sbjct 5063 CAAATTTTTGTTAAAACTCTTACTGGAAAAACTATAACTCTTGATGTTGAATCATCTGAC 5004 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| ||| |||||||||||| || || || || ||||| || |||||| Sbjct 5003 ACAATCGAAAACGTTAAATCAAAGATTCAGGATAAGGAGGGCATTCCTCCTGATCAGCAA 4944 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 | |||||||| || || || |||||||| |||||||| || |||| |||||||| | Sbjct 4943 AGGCTTATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGAAC-CTTGAGTGATTATAATAT 4885 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| ||||| || |||||| | ||| || Sbjct 4884 ACAAAAGGAATCCACCCTGCATTTGGTTCTG 4854 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || |||||||| || || ||||| || || || || || || || ||| Sbjct 5291 CAGATATTTGTTAAAACTCTTACTGGGAAAACTATAACTCTTGATGTTGAGTCATCTGAC 5232 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| ||| |||||||||||| || || || || ||||| || |||||| Sbjct 5231 ACAATTGAAAACGTTAAATCAAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCAGCAA 5172 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | |||||||| || || || |||||||| |||||||| ||| | |||||| || | Sbjct 5171 AGGCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGAAGAACTTTGAGCGATTACAATATT 5112 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 || ||||||||||| ||||||| || || Sbjct 5111 CAGAAAGAATCAACTTTGCATCTGGTATT 5083 >seq43996 Length=5100 Score = 152 bits (168), Expect = 1e-31 Identities = 162/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || |||||||| || |||||||| || || || || || ||| || ||| Sbjct 5063 CAGATATTTGTTAAAACTCTTACTGGAAAAACTATAACTCTTGATGTTGAATCATCTGAC 5004 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| ||| |||||||||||| || || || || ||||| || |||||| Sbjct 5003 ACAATCGAAAACGTTAAATCAAAGATTCAGGATAAGGAGGGCATTCCTCCTGATCAGCAA 4944 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 | |||||||| || || || |||||||| |||||||| || |||| |||||||| | Sbjct 4943 AGGCTTATCTTTGCGGGCAAGCAGCTCGAGGATGGAAGAAC-CTTGAGTGATTATAATAT 4885 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| ||||| || |||||| | ||| || Sbjct 4884 ACAAAAGGAATCCACCCTGCATTTGGTTCTG 4854 >seq33280 Length=5083 Score = 138 bits (152), Expect = 3e-27 Identities = 131/166 (79%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || |||||||| ||||| || || || ||| || ||| Sbjct 174 CAAATTTTTGTTAAAACGTTAACCGGAAAAACCATCACTCTTGACGTTGAATCATCTGAC 115 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| ||| ||| ||||||||||| || ||||| ||||| || ||||| Sbjct 114 ACCATTGAAAACGTGAAAACAAAAATTCAGGACAAGGAGGGAATTCCTCCTGATCAGCAG 55 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 ||||||| ||||| ||||||||||| || ||||| || || |||| Sbjct 54 AGACTTATTTTCGCTGGAAAACAGCTTGAGGATGGGAGAAC-CTTG 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202637507135316