Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq26121 100 3e-16 seq26067 82.4 8e-11 >seq26121 Length=543453 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||||||||||||||| ||||| || || || || | |||||||| |||||| |||| Sbjct 56961 CCTCGTCTCTGCTGATGAGTTCATTGGAGAAGGTAAGACCGGGCATGAGTCCTCGCTTCT 57020 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| || || |||||||| || || || ||||| || ||||| || | |||||| | Sbjct 57021 TGAGCCAGAAGATTGCGGCGAAAGAGCCTGAGAAGAAGATGCCCTCCACTGCTGCAAAGG 57080 Query 17106 CGA 17108 ||| Sbjct 57081 CGA 57083 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || |||||||||||||| |||||||| ||||| |||||||| ||||| ||||| Sbjct 57996 ATGTATGTATCGATGAGTAGTGAATACATTTCTGAGTGGATGTTCTCAATGGCGATCTGG 58055 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || || || || || | |||||| |||| || ||||| Sbjct 58056 AACCCATAGAAACACCTGGCTTCTGCTACCTGGACTTC 58093 >seq26067 Length=6056 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || |||||||||||||| |||||||| ||||| |||||||| ||||| ||||| Sbjct 4351 ATGTATGTATCGATGAGTAGTGAATACATTTCTGAGTGGATGTTCTCGATGGCGATCTGG 4292 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || || || || || | |||||| |||| || ||||| Sbjct 4291 AAACCATAGAAACACCTGGCTTCTGCTACCTGGACTTC 4254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517339248099960