Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq27488 246 9e-61 seq28098 203 1e-47 seq22221 147 6e-31 seq25466 125 2e-24 seq27610 123 7e-24 seq19111 123 7e-24 seq30576 120 9e-23 seq30476 118 3e-22 seq11702 116 1e-21 seq1393 107 6e-19 seq28665 104 7e-18 seq1037 98.7 3e-16 seq24565 95.1 4e-15 seq30254 89.7 2e-13 seq24854 86.0 2e-12 >seq27488 Length=630907 Score = 246 bits (272), Expect = 9e-61 Identities = 198/238 (83%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 6949 CGGGCGATCCGGCGCGTGAATTCACCATGATTCAGTCAGCCCCGCTGATGCTGCTGGCAG 7008 |||| ||||||||||| |||||| |||||||||| || | ||||||||||||||| || Sbjct 364665 CGGGGGATCCGGCGCGCGAATTCCCCATGATTCACTCCACTCCGCTGATGCTGCTGCCAC 364606 Query 7009 ACCCGGACGAGTTCGTGTCCGTCAAGCTGGCATAACTTCCACCTGTGGCCCATTCGGGCC 7068 |||| |||| ||||| ||||| | ||||||| |||||| || ||||||| ||||||| Sbjct 364605 ACCCTGACGCATTCGTCTCCGTTTA-CTGGCATGACTTCCCCCAGTGGCCCTGTCGGGCC 364547 Query 7069 ACCTTTCTGGAGTATTACCCATGACAGAGAAAGAAAAGCTGATTGCTCGGCTGAATGAAC 7128 |||||| ||||||||| ||| ||||| | ||||| || ||||| |||| |||||||| | Sbjct 364546 ACCTTTGTGGAGTATTTCCCCTGACATAAAAAGACAATCTGATCCCTCGCCTGAATGACC 364487 Query 7129 TTGGTACCCAGCTTAACCGCGAAGTCAGCACCAGCGGCACCATTCAGGAACTCACTAT 7186 |||| || |||||||||||||| |||| |||| ||||||| ||||||||||| || || Sbjct 364486 TTGGCACTCAGCTTAACCGCGAGGTCACCACCTGCGGCACGATTCAGGAACTTACCAT 364429 >seq28098 Length=251556 Score = 203 bits (224), Expect = 1e-47 Identities = 166/202 (82%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 7070 CCTTTCTGGAGTATTACCCATGACAGAGAAAGAAAAGCTGATTGCTCGGCTGAATGAACT 7129 |||| | |||||||| || |||||||| || ||||| ||||| ||||| |||||||| || Sbjct 85165 CCTTACAGGAGTATTTCCTATGACAGATAACGAAAAACTGATCGCTCGCCTGAATGACCT 85106 Query 7130 TGGTACCCAGCTTAACCGCGAAGTCAGCACCAGCGGCACCATTCAGGAACTCACTATGCG 7189 ||| || || ||||||||||| |||| ||||| |||||| ||||| ||||| || ||||| Sbjct 85105 TGGCACTCAACTTAACCGCGAGGTCATCACCATCGGCACGATTCATGAACTTACCATGCG 85046 Query 7190 TATTGCTGAGCTTGAAGAGGAGCTGGATGGAGACGCCACCTCGGTTGACGGCGAAAGCGG 7249 ||||||||| || |||| ||||||||||| || |||| ||| ||||||| ||| ||| Sbjct 85045 TATTGCTGACCTGAAAGACGAGCTGGATGGTGATGCCAGTTCGATTGACGGTGAATACGG 84986 Query 7250 CGGGCAGAATGCTGCCGACAGC 7271 | | |||||||| |||||||| Sbjct 84985 AGAGAAGAATGCTCCCGACAGC 84964 >seq22221 Length=2446128 Score = 147 bits (162), Expect = 6e-31 Identities = 163/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 7331 GGAAAAAGTAAAATCGGAAGCGGGTACAAATGGTGACCAGGTATCAGTAGAAACGCTGGC 7390 ||||||||||||| | ||||||| |||| | ||||| |||||||||| ||||||||| Sbjct 740775 GGAAAAAGTAAAAACCGAAGCGGTCACAACGGATGACCGGGTATCAGTAAAAACGCTGGT 740716 Query 7391 TACCCTGCATGTTGAGGCACTACATGCCACGCGTAACGAACCGGTATCCATCGTTGAGCC 7450 ||| |||| | | || || || |||||||||||||| | || || || || ||||| Sbjct 740715 GACCTTGCACATAAACGCGCTTCACGCCACGCGTAACGAGTCTGTGTCAATTGTCGAGCC 740656 Query 7451 CGGTGTGATTATCCGCGTATCCGAACAGGATGCAGACGAGCTGATCTCAAAGGG-GCTGG 7509 ||||| |||||||||| | || || || |||| ||||| || ||| ||||| Sbjct 740655 TGGTGTCGTTATCCGCGTGACTGACGTAGACGCTAACGACCTGATATCTCGGGGCGCTGG 740596 Query 7510 CTCGCGAAGTCTGA-AGGGGGCCGCATGGCTGATT 7543 | || ||| ||||| |||||||| |||||||||| Sbjct 740595 CCCGGGAAATCTGACAGGGGGCCTAATGGCTGATT 740561 >seq25466 Length=525030 Score = 125 bits (138), Expect = 2e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 7086 CCCATGACAGAGAAAGAAAAGCTGATTGCTCGGCTGAATGAACTTGGTACCCAGCTTAAC 7145 |||||||| || ||| | ||||| ||||| | || ||| ||||| | | |||| Sbjct 238196 CCCATGACCTTTAAGGAATATCTGATCGCTCGCCCGACTGACCTTGGCGCTCCTCTTACA 238137 Query 7146 CGCGAAGTCAGCACCAGCGGCACCATTCAGGAACTCACTATGCGTATTGCTGAGCTTGAA 7205 ||||| |||||||||| |||||| ||||||||||| || |||||||||||||| ||| Sbjct 238136 CGCGAGGTCAGCACCACCGGCACGATTCAGGAACTTACGATGCGTATTGCTGATTCGGAA 238077 Query 7206 GAGGAGCTGGATGGAGACGCCACCTCGGTTGACGGCGAAAGCGG 7249 |||||||||||||| || |||| || ||||| | ||| ||| Sbjct 238076 GAGGAGCTGGATGGTGATGCCAGTTCTATTGACCGTCAAAACGG 238033 >seq27610 Length=727261 Score = 123 bits (136), Expect = 7e-24 Identities = 82/91 (90%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 7036 TGGCATAACTTCCACCTGTGGCCCATTCGGGCCACCTTTCTGGAGTATTACCCATGACAG 7095 ||||||||||||| || ||||||| ||||||| ||||||||||||||| |||||||||| Sbjct 378604 TGGCATAACTTCCCCCAGTGGCCCTGTCGGGCCCCCTTTCTGGAGTATTTCCCATGACAG 378663 Query 7096 AGAAAGAAAAGCTGATTGCTCGGCTGAATGA 7126 |||||||||||||||| || || |||||||| Sbjct 378664 AGAAAGAAAAGCTGATCGCGCGCCTGAATGA 378694 >seq19111 Length=857609 Score = 123 bits (136), Expect = 7e-24 Identities = 106/130 (82%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 6920 GACGCGTTACCCGAAAAACTGGGTGCAAACGGGCGATCCGGCGCGTGAATTCACCATGAT 6979 ||| || | ||| ||||||||||||||| |||| ||||||||||| |||||||||||||| Sbjct 856943 GACACGCTTCCCTAAAAACTGGGTGCAATCGGGGGATCCGGCGCGCGAATTCACCATGAT 857002 Query 6980 TC--AGTCAGCCCCGCTGATGCTGCTGGCAGACCCGGACGAGTTCGTGTCCGTCAAGCTG 7037 || | ||||||||||| |||| || |||| |||| ||||| |||||| | ||| Sbjct 857003 TCTTTTTTTTACCCGCTGATGCAGCTGCCATACCCTGACGCATTCGTCTCCGTCTAACTG 857062 Query 7038 GCATAACTTC 7047 |||||||||| Sbjct 857063 GCATAACTTC 857072 >seq30576 Length=233388 Score = 120 bits (132), Expect = 9e-23 Identities = 80/89 (90%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 7062 TCGGGCCACCTTTCTGGAGTATTACCCATGACAGAGAAAGAAAAGCTGATTGCTCGGCTG 7121 ||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||| ||| Sbjct 17414 TCGGGCCACCTTTCTGGAGTATTTCTGATGACCGAGAAAGAAAAGCTGATCGCTCGCCTG 17473 Query 7122 AATGAACTTGGTACCCAGCTTAACCGCGA 7150 ||||| ||||| || |||||||||||||| Sbjct 17474 AATGACCTTGGCACTCAGCTTAACCGCGA 17502 >seq30476 Length=421711 Score = 118 bits (130), Expect = 3e-22 Identities = 83/95 (87%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 7146 CGCGAAGTCAGCACCAGCGGCACCATTCAGGAACTCACTATGCGTATTGCTGAGCTTGAA 7205 ||||| ||||||||||||||||| ||||||||||| || |||| |||||||||||| ||| Sbjct 396731 CGCGAGGTCAGCACCAGCGGCACGATTCAGGAACTTACGATGCATATTGCTGAGCTGGAA 396790 Query 7206 GAGGAGCTGGATGGAGACGCCACCTCGGTTGACGG 7240 || ||||||||||| || |||| ||| ||||||| Sbjct 396791 GACGAGCTGGATGGTGATGCCAGTTCGATTGACGG 396825 >seq11702 Length=135243 Score = 116 bits (128), Expect = 1e-21 Identities = 82/94 (87%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 7053 GTGGCCCATTCGGGCCACCTTTCTGGAGTATTACCCATGACAGAGAAAGAAAAGCTGATT 7112 ||||||| ||||||||||||||||||||||| ||| ||||| |||||||||||||||| Sbjct 35507 GTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCCTGACATAGAAAGAAAAGCTGATC 35448 Query 7113 GCTCGGCTGAATGAACTTGGTACCCAGCTTAACC 7146 ||||| |||||||| ||||| || || |||| || Sbjct 35447 GCTCGCCTGAATGACCTTGGCACTCATCTTATCC 35414 >seq1393 Length=164408 Score = 107 bits (118), Expect = 6e-19 Identities = 82/97 (85%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 7176 GAACTCACTATGCGTATTGCTGAGCTTGAAGAGGAGCTGGATGGAGACGCCACCTCGGTT 7235 ||||| || ||||||||||||||||| ||||||||||||||||| || |||| ||| || Sbjct 96915 GAACTTACGATGCGTATTGCTGAGCTGGAAGAGGAGCTGGATGGTGATGCCAGTTCGATT 96856 Query 7236 GACGGCGAAAGCGGCGGGCAGAATGCTGCCGACAGCA 7272 ||||| |||| ||| | | | |||||| ||||||||| Sbjct 96855 GACGGTGAAAACGGAGAGAAAAATGCTCCCGACAGCA 96819 >seq28665 Length=408771 Score = 104 bits (114), Expect = 7e-18 Identities = 109/142 (77%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 6990 CCGCTGATGCTGCTGGCAGACCCGGACGAGTTCGTGTCCGTCAAGCTGGCATAACTTCCA 7049 ||||||||||||||| || | || ||||| ||| || |||||||||||||| Sbjct 384705 CCGCTGATGCTGCTGCCATAACCTCTGCTCTTCGTCTCCATCTTACTGGCATAACTTCCC 384764 Query 7050 CCTGTGGCCCATTCGGGCCACCTTTCTGGAGTATTACCCATGACAGAGAAAGAAAAGCTG 7109 || || | | |||||||| ||||||||| |||| ||||||||| | |||||||| ||| Sbjct 384765 CCAGT-TCTCTGTCGGGCCAACTTTCTGGAATATTTCCCATGACAAAAAAAGAAAATCTG 384823 Query 7110 ATTGCTCGGCTGAATGAACTTG 7131 || |||| ||||||| |||| Sbjct 384824 ATCGCTCACTTGAATGACCTTG 384845 >seq1037 Length=313920 Score = 98.7 bits (108), Expect = 3e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 7053 GTGGCCCATTCGGGCCACCTTTCTGGAGTATTACCCATGACAGAGAAAGAAAAGCTGATT 7112 ||||||| ||||||||||||||||||||||| ||||||||||| ||| |||| ||||| Sbjct 86578 GTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGACAAATAAAATCTGATC 86637 Query 7113 GCTCGGCTGAATGA 7126 ||||| |||||||| Sbjct 86638 GCTCGCCTGAATGA 86651 >seq24565 Length=1293330 Score = 95.1 bits (104), Expect = 4e-15 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 7118 GCTGAATGAACTTGGTACCCAGCTTAACCGCGAAGTCAGCACCAGCGGCACCATTCAGGA 7177 ||||||||| ||||| | | ||||||||| | ||| ||||| ||||| ||||| || Sbjct 281998 GCTGAATGACCTTGGCATTCTTCTTAACCGCTAGGTCGTCACCATCGGCATGATTCAAGA 282057 Query 7178 ACTCACTATGCGTATTGCTGAGCTTGAAGAGGAGCTGGATGGAGACGCCA 7227 | | || | ||||||||||||||| ||| |||| |||||||| || |||| Sbjct 282058 AGTTACCACGCGTATTGCTGAGCTGGAAAAGGATCTGGATGGCGATGCCA 282107 >seq30254 Length=386871 Score = 89.7 bits (98), Expect = 2e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 7337 AGTAAAATCGGAAGCGGGTACAAATGGTGACCAGGTATCAGTAGAAACGCTGGCTACCCT 7396 |||| || || |||||| || | | ||||| |||||||||||||||||||| ||| | Sbjct 70011 AGTATAACCG-AAGCGGTCACTACGGATGACCGGGTATCAGTAGAAACGCTGGTGACCTT 69953 Query 7397 GCATGTTGAGGCACTACATGCCACGCGTAACGAACCGGTATCCATCGTTGAGCCC-GGTG 7455 ||| | | || || || |||||||||||||| | || || || || |||||| |||| Sbjct 69952 GCACATAAACGCGCTTCACGCCACGCGTAACGAGTCTGTGTCTATTGTCGAGCCCTGGTG 69893 Query 7456 TGATTATCCGCGT 7468 | |||||| ||| Sbjct 69892 TCGTTATCCCCGT 69880 >seq24854 Length=376709 Score = 86.0 bits (94), Expect = 2e-12 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 7331 GGAAAAAGTAAAATCGGAAGCGGGTACAAATGGTGACCAGGTATCAGTAGAAA-CGCTGG 7389 ||||||||||| | | ||| ||| |||| | ||||| |||||||||||||| |||||| Sbjct 56367 GGAAAAAGTAATAACCGAAACGGTCACAACGGATGACCGGGTATCAGTAGAAATCGCTGG 56308 Query 7390 CTACCCTGCATGTTGAGGCACTACATGCCACGCGTAACGAACCGGTATCCATCGTTGAGC 7449 ||| |||| | | || || || |||||||||||||| | || || || || |||| Sbjct 56307 TGACCTTGCACATAAACGCGCTTCACGCCACGCGTAACGAGTCTGTGTCTATTGTCGAGC 56248 Query 7450 CCGG 7453 | || Sbjct 56247 CTGG 56244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148222235571018