Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq26231 91.5 1e-13 >seq26231 Length=1354672 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| ||||||||||| || ||| | || || | Sbjct 552266 CAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCAA 552207 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 |||| || || ||||| || | ||||| || |||||||| | || || |||||| | Sbjct 552206 GTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCTTCTTTGTCCTGGA 552147 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | ||| | ||| ||||| | || || ||||||| Sbjct 552146 TCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTTGC 552087 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 | || || ||||| |||||||| ||||||||| Sbjct 552086 CGGTGAGGGTCTTGACAAAGATCTGCATGTTG 552055 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| ||||||||||| || ||| | || || ||||| || || ||||| | Sbjct 550949 CCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAAGA 550890 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 | | ||||| || |||||||| | || || |||||| || || ||| || | Sbjct 550889 TGAGACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTTACGTTCT 550830 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | | ||| | ||| ||||| | || || |||||||| || || ||||| |||| Sbjct 550829 CGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACAA 550770 Query 45327 AGATTTGCATGTTG 45340 |||| ||||||||| Sbjct 550769 AGATCTGCATGTTG 550756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394921616614837