Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq29598 102 7e-17 seq26231 89.7 5e-13 >seq29598 Length=358761 Score = 102 bits (112), Expect = 7e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 22414 CCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCC 22473 ||||| ||| || | |||| ||| | | |||||| | || ||||| || ||||| || Sbjct 197277 CCACAGACCCATATCAGTCAGGTCTCTTAGGAGATGATGATTGACCACCTGGAACTCTCC 197336 Query 22474 GGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCC 22533 |||| || ||||| ||| ||||| ||| | || |||| | |||||||| || Sbjct 197337 TGACAGCACACGGCGCGTGTAGATGTTACTCGTGTAAGGCTCGATGGCCTCATTGTTACC 197396 Query 22534 CAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCC 22593 ||| ||||||||||| || ||||||||||| || || | || || ||||| | ||| Sbjct 197397 CAGGATCTGAGCGGTGGATGCGGTCGGCATGGGAGCAAGGAGGAGACTGTTTCGGACGCC 197456 Query 22594 GTGCTT 22599 |||||| Sbjct 197457 GTGCTT 197462 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT 23124 ||||||||| || || ||||| ||||| || ||||| || |||||||| || ||||| Sbjct 199678 GTACTCTACGATCTCTGTACACAGATTACTGCACTTGATGGTGCCCAAGTTTTGTTGGTT 199737 Query 23125 GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA 23184 || || || || |||||||||| |||||| || || || ||||| ||| || Sbjct 199738 ACTCTTCTTGTTACAATGGTCCTTGTAGACCATGTAAGGGGTACCAGTCTCTGTCTGGGA 199797 Query 23185 CTCGATGATCGCTCGCCACATAGTCTGAGC 23214 ||||||||| || ||||| || |||||| Sbjct 199798 CTCGATGATGGCATACCACAGAGCCTGAGC 199827 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||| || | | |||| || | ||| || ||||| ||| |||||||||| || || || | Sbjct 200565 TTCCACCCTTTTCATGAATAAATCTGGGATCCAGAGACCGTAGAACAGGTCCCGAGCCCT 200624 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 | |||||| || ||| |||||| || | || | ||||| || | ||| |||||||| Sbjct 200625 CTGCTCCTCCTTACCGTGGTTCTTCTTACAGTCTAGGAAGTCAAAGATGTCTGCATGCCA 200684 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGG 23490 |||||| ||||| | || || || || || Sbjct 200685 CGGCTCCAGGTAGATTGCGAAAGCACCAGG 200714 >seq26231 Length=1354672 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || |||||||| || ||||| |||| || ||||| Sbjct 552287 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACACTCGAGGTCGAACCAAGT 552346 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | || || | || |||||| |||||| | || ||||| ||| Sbjct 552347 GACTCCATCGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCGATCAG 552406 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || |||||||| || | || || | ||| | || || ||| Sbjct 552407 CAGCGTCTCATCTTTGCTGGCAAGCAACTTGAGGATGGTCGCACTCTCTCAGACTACAAC 552466 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || ||||| ||||| || || || || | || |||| Sbjct 552467 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTCAGGCTCCGTGGTGGTA 552515 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| || || ||||| || ||||| |||| || || || Sbjct 552056 AACATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACACTCGAGGTCGAGCCA 552115 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||| |||| | || || | || |||||| |||||| | || ||||| Sbjct 552116 AGTGACTCCATCGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCGAT 552175 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||||||||| || | ||||| ||| | || || Sbjct 552176 CAGCAGCGTCTCATCTTCGCTGGCAAGCAACTTGAAGATGGCCGCACTCTCTCAGACTAC 552235 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || || |||||||| || || || || | || |||| Sbjct 552236 AACATCCAGAAGGAGTCCACACTTCATCTTGTTCTCAGGCTTCGTGGTGGTA 552287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445588667364240