Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq26965 87.8 2e-12 seq26121 84.2 3e-11 >seq26965 Length=571932 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 9/151 (6%) Strand=Plus/Plus Query 33657 CGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCA 33716 ||||| || | |||||| || | ||| || ||||| || |||||||||||||| |||||| Sbjct 62585 CGCTTCTTGAACCAAAAAATAGCAGCAAAGGATCCTGAGAAGAAGATTCCTTCCACTGCA 62644 Query 33717 GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT------GTATCCACTTTTGA 33770 ||||| |||| | |||||| | | || ||| |||| ||||||||| | Sbjct 62645 GCAAATGCAACCAATCTCTCAGCGAA---GGTGCTCTCATCTGATGCTATCCACTTCAAA 62701 Query 33771 GCCCAATCGGCCTTCTTTTTTACACAAGGCA 33801 ||||| || || ||||| || ||| | |||| Sbjct 62702 GCCCAGTCTGCTTTCTTCTTCACAAATGGCA 62732 >seq26121 Length=543453 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/103 (79%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 33269 TTCTTGAGA-CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAG 33327 || ||||| ||| || ||||| || ||||||||||| || | || || || || || | Sbjct 55662 TTGTTGAGCTCATGACGCCCATCTTCTGGTATTCACCAACCCTCTTCTCAAAGAAGTTTG 55721 Query 33328 TTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 | |||||||||||||| || ||||||||||| ||||| || || Sbjct 55722 TCTTTCCTTCCAATGAGATGTTTTCCATGAAGTCAAATGGGTT 55764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629566483850160