Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq2070 98.7 8e-16 seq27420 95.1 1e-14 seq31154 91.5 1e-13 >seq2070 Length=221348 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 20924 CAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCC 20983 ||| || || | ||| ||| || || || || |||||||||||||||||||| ||||| Sbjct 201438 CAGTGGTTCGATGTGATTGAGATACACATGCGCATCACCCAAGGTGTGCACAAAATCTCC 201497 Query 20984 CGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTT 21043 || | ||||| || || ||||| |||| || || ||||| | ||| ||||||||||| Sbjct 201498 TGGTTTGAGGCCAGTCACATGAGCAATCATGTATGTGAGGAGAGAGTAACTGGCGATGTT 201557 Query 21044 AAACGGGACCCCGAGGCCC 21062 || || || || || ||| Sbjct 201558 GAAAGGCACTCCCAGACCC 201576 >seq27420 Length=320187 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 20946 TAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGA 21005 || || || || |||||||||||||||||||| ||||| || | ||||| || || ||| Sbjct 118993 TACACATGCGCATCACCCAAGGTGTGCACAAAATCTCCTGGTTTGAGGCCAGTCACATGA 119052 Query 21006 GCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCC 21062 || |||| || || ||||| | ||| ||||||||||| || || || || || ||| Sbjct 119053 GCAATCATGTATGTGAGGAGAGAGTAACTGGCGATGTTGAAAGGCACTCCCAGACCC 119109 >seq31154 Length=245217 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 || || || | ||| ||| || || || || |||||||||||||||||||| ||||| Sbjct 181057 AGTGGTTCGATGTGATTGAGATACACATGCGCATCACCCAAGGTGTGCACAAAATCTCCT 180998 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 || | || || || || ||||| |||| || || ||||| | ||| ||||||||||| Sbjct 180997 GGTTTGAGACCAGTCACATGAGCAATCATGTATGTGAGGAGAGAGTAACTGGCGATGTTG 180938 Query 21045 AACGGGACCCCGAGGCCC 21062 || || || || || ||| Sbjct 180937 AAGGGCACTCCCAGACCC 180920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427609704352560