Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq29598 96.9 5e-15 seq26121 93.3 6e-14 seq26067 87.8 2e-12 seq26965 84.2 3e-11 >seq29598 Length=358761 Score = 96.9 bits (106), Expect = 5e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 71725 ACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTT 71784 ||||||| |||| || || | || || || || || |||||||| ||||||||||| Sbjct 199661 ACCTCATCAGCACTGGAGTACTCTACGATCTCTGTACACAGATTACTGCACTTGATGGTG 199720 Query 71785 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTA 71844 || || |||||||| |||||||| |||||||| ||||| || | || | || ||| Sbjct 199721 CCCAAGTTTTGTTGGTTACTCTTCTTGTTACAATGGTCCTTGTAGACCATGTAAGGGGTA 199780 Query 71845 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT 71897 ||||| || |||| || || || || || | ||| | | ||||||| || Sbjct 199781 CCAGTCTCTGTCTGGGACTCGATGATGGCATACCACAGAGCCTGAGCCTTGAT 199833 >seq26121 Length=543453 Score = 93.3 bits (102), Expect = 6e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||| | ||||||||||| | || |||||||||||| || ||||| |||||||| Sbjct 57989 ATCTTTGATGTATGTATCGATGAGTAGTGAATACATTTCTGAGTGGATGTTCTCAATGGC 58048 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 ||||| || || |||||||| ||||| || | ||||| |||||| Sbjct 58049 GATCTGGAACCCATAGAAACACCTGGCTTCTGCTACCTGGACTTCT 58094 Score = 87.8 bits (96), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 41752 TTCTTGAGA-CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAG 41810 || ||||| ||| || ||||| || ||||||||||| || | || || || || || | Sbjct 55662 TTGTTGAGCTCATGACGCCCATCTTCTGGTATTCACCAACCCTCTTCTCAAAGAAGTTTG 55721 Query 41811 TCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||||||||||||||| || ||||||||||| ||||| || || Sbjct 55722 TCTTTCCTTCCAATGAGATGTTTTCCATGAAGTCAAATGGGTT 55764 >seq26067 Length=6056 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||| | ||||||||||| | || |||||||||||| || ||||| || ||||| Sbjct 4358 ATCTTTGATGTATGTATCGATGAGTAGTGAATACATTTCTGAGTGGATGTTCTCGATGGC 4299 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 ||||| || || |||||||| ||||| || | ||||| |||||| Sbjct 4298 GATCTGGAAACCATAGAAACACCTGGCTTCTGCTACCTGGACTTCT 4253 >seq26965 Length=571932 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/149 (74%), Gaps = 5/149 (3%) Strand=Plus/Plus Query 42140 CGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCC 42199 ||||| || | |||||| |||| ||||| ||||| || |||||||||||||| ||||| Sbjct 62585 CGCTTCTTGAACCAAAAAATAGCAGCAAAGGATCCTGAGAAGAAGATTCCTTCCACTGCA 62644 Query 42200 GCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC---TGTCATG-TATCCACTTTTGAGC 42255 ||||| |||| | |||||| | || || | | | ||| ||||||||| ||| Sbjct 62645 GCAAATGCAACCAATCTCTCAGC-GAAGGTGCTCTCATCTGATGCTATCCACTTCAAAGC 62703 Query 42256 CCAATCGGCCTTCTTTTTTACACAAGGCA 42284 ||| || || ||||| || ||| | |||| Sbjct 62704 CCAGTCTGCTTTCTTCTTCACAAATGGCA 62732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670871608411720