Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq29743 109 8e-19 seq26121 95.1 2e-14 seq29598 84.2 3e-11 >seq29743 Length=317098 Score = 109 bits (120), Expect = 8e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 |||||| || || ||||| || ||||| || ||||| || |||||||| | ||| || || Sbjct 13620 GAATCCATGTGTAAGGTGACCACCGTCCGGTAGATCCAGACCCATGATACGACCATGGGG 13679 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 || | ||||||||| ||||||||||| || ||||| || ||||| || ||| Sbjct 13680 GCCAATCACTCCAGTGTAGACGGCAAAGTTTGCTGGAGAGCCTGAATACGGCTGGACATT 13739 Query 127563 CACTCCCCATTCGGACTCGTTCAAATTGAACGCT-CTGAGACATCGCTGCTGTGCTAGCA 127621 || |||||||| ||| |||||| || ||| || || | || || ||| | || | Sbjct 13740 GACGCCCCATTCCTCCTCCTTCAAACCAAATGCTGCTAAGGC-TCTCTTCTGAGTCAGAA 13798 Query 127622 GTTCGATGCGATCGATAAACTCGTTACCACCATAGTATC 127660 |||| || ||| | |||| |||| |||||||||| Sbjct 13799 GTTCCATTTCATCAAAGAACTGCGTACCGCCATAGTATC 13837 >seq26121 Length=543453 Score = 95.1 bits (104), Expect = 2e-14 Identities = 134/188 (71%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 || |||||| ||| || ||||| ||| | | ||||| ||||| |||| ||||| ||| Sbjct 58953 TTCCCCATCCAGTACCACGACATCTGGCAGTTCTACAAGAAGGCCGAGGCTTCCTTCTGG 58894 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | || ||||| || |||||||||||||| || | |||| | || | | ||| Sbjct 58893 ACCGCTGAGGAGGTTGACCTGTCCAAGGACCTTGACCACTGGGCCAATCTTAAGGACGAA 58834 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||| || | || || ||||| || | || |||||||| | | |||||| |||||| Sbjct 58833 ---GAGAGACACTTCATCTCGCATGTTCTTGCTTTCTTTGCAGCCAGCGATGGCATCGTC 58777 Query 125178 AACGACAA 125185 || || || Sbjct 58776 AATGAGAA 58769 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || || || || || |||||||||||||| || || ||| || || ||||| ||| Sbjct 57084 GTCGCCTTTGCAGCAGTGGAGGGCATCTTCTTCTCAGGCTCTTTCGCCGCAATCTTCTGG 57025 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||||||||||| |||||||||||||| || || Sbjct 57024 CTCAAGAAGCGAGGACTCATGCCCGGTCTTAC 56993 >seq29598 Length=358761 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 |||||| | |||||| | | | ||| ||||||||| || || ||||| |||||||| Sbjct 199818 CTGTGGTATGCCATCATCGAGTCCCAGACAGAGACTGGTACCCCTTACATGGTCTACAAG 199759 Query 97239 GATACCGTGAATCGC-AACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCT 97297 || | || | | || || ||||||| ||||||||||||||||| || ||||| Sbjct 199758 GAC-CATTGTAACAAGAAGAGTAACCAACAAAACTTGGGCACCATCAAGTGCAGTAATCT 199700 Query 97298 GTGCACGGAAATTGTAGAGTACGCC 97322 ||| || || || ||||||||| || Sbjct 199699 GTGTACAGAGATCGTAGAGTACTCC 199675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740763730433720