Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq26231 87.8 1e-12 >seq26231 Length=1354672 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| ||||| || || || |||||||| || ||| | | | || || Sbjct 555004 AACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTC 554945 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||||||| | || | ||| || || ||| || || ||||||||||| Sbjct 554944 AAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCTTCTTTGTCCTG 554885 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| |||||| | || |||| ||| || || || || | || ||||| || Sbjct 554884 GATCTTGGCCTTTACGTTCTCGATGGAATCACTTGGCTCGACCTCGAGTGTGATGGTCTT 554825 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || ||||| || || || |||||| Sbjct 554824 GCCTGTGAGGGTTTTGACGAAGATCTGCATA 554794 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| ||||| || || || |||||||| || ||| | | | || || Sbjct 555460 AACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCCTC 555401 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||||||| | || | |||||| || ||| || || ||||||||||| Sbjct 555400 AAGTTGCTTGCCAGCGAAGATGAGACGTTGCTGATCGGGAGGGATGCCTTCTTTGTCCTG 555341 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| |||||| | || |||| || || || || || | || ||||| || Sbjct 555340 GATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTT 555281 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || ||||| || || || |||||| Sbjct 555280 GCCTGTGAGGGTTTTGACGAAGATCTGCATA 555250 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| || ||||| || || || |||||||| || ||| | | | || || Sbjct 552724 AACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTC 552665 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||||||| | || | ||| || || ||| || || ||||||||||| Sbjct 552664 AAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCTTCTTTGTCCTG 552605 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| |||||| | || |||| ||| || || || || | || ||||| || Sbjct 552604 GATCTTGGCCTTTACGTTCTCGATGGAATCACTTGGCTCGACCTCGAGTGTGATGGTCTT 552545 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || ||||| || || || |||||| Sbjct 552544 GCCTGTGAGGGTTTTGACGAAGATCTGCATA 552514 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| ||||| || || || |||||||| || ||| | | | || || Sbjct 553636 AACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCCTC 553577 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||||||| | || | ||| || || ||| || || ||||||||||| Sbjct 553576 AAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCTTCTTTGTCCTG 553517 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| |||||| | || |||| || || || || || | || ||||| || Sbjct 553516 GATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTT 553457 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || ||||| || || || |||||| Sbjct 553456 GCCTGTGAGGGTTTTGACGAAGATCTGCATA 553426 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| ||||| || || || |||||||| || ||| | | | || || Sbjct 554092 AACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCCTC 554033 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||||||| | || | ||| || || ||| || || ||||||||||| Sbjct 554032 AAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCTTCTTTGTCCTG 553973 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| |||||| | || |||| || || || || || | || ||||| || Sbjct 553972 GATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTT 553913 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || ||||| || || || |||||| Sbjct 553912 GCCTGTGAGGGTTTTGACGAAGATCTGCATA 553882 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| || ||||| || || || |||||||| || ||| | | | || || Sbjct 554776 AACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTC 554717 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| |||||||| | || | ||| || || ||| ||||| ||||||||||| Sbjct 554716 AAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTG 554657 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| |||||| | || |||| ||| || || || || | || ||||| || Sbjct 554656 GATCTTGGCCTTTACGTTCTCAATGGAATCACTTGGCTCGACCTCGAGTGTGATGGTCTT 554597 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || ||||| || || || |||||| Sbjct 554596 GCCTGTGAGGGTTTTGACGAAGATCTGCATA 554566 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| ||||| || || || |||||||| || ||| | | | ||||| Sbjct 552268 AACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTC 552209 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||||||| | || | ||| || || ||| || || ||||||||||| Sbjct 552208 AAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCTTCTTTGTCCTG 552149 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| |||||| | || |||| || || || || || | || ||||| || Sbjct 552148 GATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTT 552089 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || || || || ||||| || ||||| || Sbjct 552088 GCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 552056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362038404760077