Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq31154 102 6e-17 seq2070 102 6e-17 seq27420 93.3 3e-14 >seq31154 Length=245217 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25422 TTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCT 25481 || || ||||| | ||||| || || || || || || |||| ||||| ||||| ||| Sbjct 181060 TTGAGTGGTTCGATGTGATTGAGATACACATGCGCATCACCCAAGGTGTGCACAAAATCT 181001 Query 25482 CCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATG 25541 || |||| || || || || | ||| |||||||| ||||||||| |||| ||||||||| Sbjct 181000 CCTGGTTTGAGACCAGTCACATGAGCAATCATGTATGTGAGGAGAGAGTAACTGGCGATG 180941 Query 25542 TTAAAGGGTACCCC 25555 || ||||| || || Sbjct 180940 TTGAAGGGCACTCC 180927 >seq2070 Length=221348 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25422 TTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCT 25481 ||||| ||||| | ||||| || || || || || || |||| ||||| ||||| ||| Sbjct 201436 TTCAGTGGTTCGATGTGATTGAGATACACATGCGCATCACCCAAGGTGTGCACAAAATCT 201495 Query 25482 CCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATG 25541 || |||| || || || || | ||| |||||||| ||||||||| |||| ||||||||| Sbjct 201496 CCTGGTTTGAGGCCAGTCACATGAGCAATCATGTATGTGAGGAGAGAGTAACTGGCGATG 201555 Query 25542 TTAAAGGGTACCCC 25555 || || || || || Sbjct 201556 TTGAAAGGCACTCC 201569 >seq27420 Length=320187 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25422 TTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCT 25481 || || ||||| ||||| || || || || || || |||| ||||| ||||| ||| Sbjct 118969 TTGAGTGGTTCGGTGTGATTGAGATACACATGCGCATCACCCAAGGTGTGCACAAAATCT 119028 Query 25482 CCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATG 25541 || |||| || || || || | ||| |||||||| ||||||||| |||| ||||||||| Sbjct 119029 CCTGGTTTGAGGCCAGTCACATGAGCAATCATGTATGTGAGGAGAGAGTAACTGGCGATG 119088 Query 25542 TTAAAGGGTACCCC 25555 || || || || || Sbjct 119089 TTGAAAGGCACTCC 119102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340005373314981