Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_005833.1 Length=48836 Score E Sequences producing significant alignments: (Bits) Value seq28821 172 2e-38 >seq28821 Length=465073 Score = 172 bits (190), Expect = 2e-38 Identities = 116/127 (91%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 2 TTGCATGGTGTGCAACTGTTGATGTGATT-GTTGCTTAGAATGCAATGATTGTGAGAGGG 60 |||||||||||||||| |||| | ||||| |||||| ||| ||||||||||||||||||| Sbjct 123587 TTGCATGGTGTGCAACAGTTGGT-TGATTTGTTGCTGAGATTGCAATGATTGTGAGAGGG 123529 Query 61 GGGATCTAGTGTTACCAGGTTCGCCTGGTAGTCATCTCCATTTTTAGCAAAAAGTGCTAT 120 |||| ||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 123528 AGGATTTAGTGTTGCCCTGTTCGCCTGGTAGTCATCTCCATTTTTAGCAAAAAGTGCTAT 123469 Query 121 CGATTAC 127 ||||||| Sbjct 123468 CGATTAC 123462 Score = 141 bits (156), Expect = 3e-29 Identities = 140/179 (78%), Gaps = 8/179 (4%) Strand=Plus/Minus Query 941 GACGAAGAAGTTCCGGTGAAGAAGCGCCGCAGCCGGAAAAAAGTCAGCCTGGCTGATTGT 1000 |||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct 122724 GACGAAGAGGTTCCCGTGAAGAAGCGCCGCAGTCGGAAAAAAGTTAGCCTGGCCGATTGC 122665 Query 1001 CTGGATTCGTTTGTTCCTGATGTTGATGATCTTGAGAAAGGCGA---CGTTACT-GTAAG 1056 |||||||||||||| |||||| | | || | | |||| | ||| || | Sbjct 122664 CTGGATTCGTTTGTGGTTGATGTGGGCAAACTGGCTGATAGCGAATTGATGACTCGTGA- 122606 Query 1057 CACCGTGCGCGACCTGGTTCGCCAGATGAAAGCGCATATCGAAAAATGTGGACTGTAAG 1115 ||| ||| | ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 122605 ---CGTAAACGAGATCGTTCGCCAGATGAAAGCGCATATCGAAAAGTGTGGACTGTAAG 122550 Score = 132 bits (146), Expect = 2e-26 Identities = 116/143 (81%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 48694 GTTGATGTGATGAATCATACCCAGTAGACATGGATAAGTCGTTAGCAAAAAATGCTATTC 48753 ||||||| ||| |||||| || || ||| ||||||||||||||| |||||||| Sbjct 123730 GTTGATGGCCCGAACTATACCCTGTCAACCTGGTCGAGTCGTTAGCAAAAA-TGCTATTC 123672 Query 48754 CAATAATTGCTCATTATTCCATCAATACTGGAATATCTGGAATAATCACGATCATGATTG 48813 ||||||||||||||||||||||||||||||||||| ||||||||| ||| | |||| Sbjct 123671 CAATAATTGCTCATTATTCCATCAATACTGGAATAGGTGGAATAATTTTGATTGTTATTG 123612 Query 48814 ATCTCTAATGATGAGATGTGATT 48836 || | |||||||| | |||||| Sbjct 123611 ATTGCGAATGATGAAACGTGATT 123589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156094452627372