Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq26231 82.4 6e-11 >seq26231 Length=1354672 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | || | |||||||||| |||||| || |||||||| |||| Sbjct 553654 ACCACCACGAAGCCTGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGA 553595 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | || || | ||||| || ||||| || || | || | |||||||||||| | Sbjct 553594 GAGAGTGCGGC-CATCCTCAAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAG 553536 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||| |||||| || || ||| | | | |||| || | | ||| Sbjct 553535 GGATGCCTTCTTTGTCCTGGATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGA 553476 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||| ||||| || || ||||| ||||| || || |||||||| Sbjct 553475 CCTCGAGTGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 553427 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | || | |||||||||| |||||| || |||||||| |||| Sbjct 554110 ACCACCACGAAGCCTGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGA 554051 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | || || | ||||| || ||||| || || | || | |||||||||||| | Sbjct 554050 GAGAGTGCGGC-CATCCTCAAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAG 553992 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||| |||||| || || ||| | | | |||| || | | ||| Sbjct 553991 GGATGCCTTCTTTGTCCTGGATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGA 553932 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||| ||||| || || ||||| ||||| || || |||||||| Sbjct 553931 CCTCGAGTGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 553883 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | || | |||||||||| |||||| || |||||||| || | Sbjct 555022 ACCACCACGAAGCCTGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCCGA 554963 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | || || | ||||| || ||||| || || | || | |||||||||||| | Sbjct 554962 GAGAGTGCGGC-CATCCTCAAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAG 554904 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||| |||||| || || ||| | | | |||| ||| | | ||| Sbjct 554903 GGATGCCTTCTTTGTCCTGGATCTTGGCCTTTACGTTCTCGATGGAATCACTTGGCTCGA 554844 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||| ||||| || || ||||| ||||| || || |||||||| Sbjct 554843 CCTCGAGTGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 554795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421087440833897