Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq26231 100 2e-16 >seq26231 Length=1354672 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||| || || | || || || | || || |||| |||||| | Sbjct 552055 CAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACACTCGAGGTCGAGCC 552114 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||| |||||||| | || || ||||| |||||||||||||| |||||||| Sbjct 552115 AAGTGACTCCATCGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCGA 552174 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| | || || | || ||||||||||| ||||||| | | | || || || Sbjct 552175 TCAGCAGCGTCTCATCTTCGCTGGCAAGCAACTTGAAGATGGCCGCACTCTCTCAGACTA 552234 Query 24167 TAACATTCAAAAAGAATCTACAATTCAT 24194 ||||| || || || || ||| ||||| Sbjct 552235 CAACATCCAGAAGGAGTCCACACTTCAT 552262 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||| || || | || || || | || || |||| |||||| | Sbjct 550756 CAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACACTCGAGGTCGAGCC 550815 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||| |||||||| | || || ||||| |||||||||||||| |||||||| Sbjct 550816 AAGTGACTCCATCGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCCGA 550875 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| | || || | || ||||||||||| ||||||| | | | || || || Sbjct 550876 TCAGCAGCGTCTCATCTTCGCTGGCAAGCAACTTGAAGATGGCCGCACTCTCTCGGACTA 550935 Query 24167 TAACATTCAAAAAGAATCTACAATTCATT 24195 ||||| || || | || ||| |||||| Sbjct 550936 CAACATCCAGAAGG--TCCACACTTCATT 550962 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || | || || |||| |||||| | | Sbjct 553427 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACACTCGAGGTCGAGCCAAGT 553486 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| |||||||| | || || ||||| |||||||||||||| ||||||||||| Sbjct 553487 GACTCCATCGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCGATCAG 553546 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||||| || |||| | | | || || || ||| Sbjct 553547 CAGCGTCTCATCTTCGCTGGCAAGCAACTTGAGGATGGCCGCACTCTCTCTGACTACAAC 553606 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || || || ||| ||||| Sbjct 553607 ATCCAGAAGGAGTCCACACTTCAT 553630 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || | || || |||| |||||| | | Sbjct 553883 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACACTCGAGGTCGAGCCAAGT 553942 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| |||||||| | || || ||||| |||||||||||||| ||||||||||| Sbjct 553943 GACTCCATCGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCGATCAG 554002 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||||| || |||| | | | || || || ||| Sbjct 554003 CAGCGTCTCATCTTCGCTGGCAAGCAACTTGAGGATGGCCGCACTCTCTCTGACTACAAC 554062 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || || || ||| ||||| Sbjct 554063 ATCCAGAAGGAGTCCACACTTCAT 554086 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || | || || |||| |||||| | | Sbjct 554795 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACACTCGAGGTCGAGCCAAGT 554854 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | || || ||||| |||||||||||||| ||||||||||| Sbjct 554855 GATTCCATCGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCGATCAG 554914 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||||| || |||| | | | || || || ||| Sbjct 554915 CAGCGTCTCATCTTCGCTGGCAAGCAACTTGAGGATGGCCGCACTCTCTCGGACTACAAC 554974 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || || || ||| ||||| Sbjct 554975 ATCCAGAAGGAGTCCACACTTCAT 554998 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || | || || |||| |||||| | | Sbjct 555251 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACACTCGAGGTCGAGCCAAGT 555310 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| |||||||| | || || ||||| |||||||||||||| ||||||||||| Sbjct 555311 GACTCCATCGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCGATCAG 555370 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || ||||||||||| || |||| | | | || || || ||| Sbjct 555371 CAACGTCTCATCTTCGCTGGCAAGCAACTTGAGGATGGCCGCACTCTCTCTGACTACAAC 555430 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || || || ||| ||||| Sbjct 555431 ATCCAGAAGGAGTCCACACTTCAT 555454 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || | || || |||| |||||| | | Sbjct 556163 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACACTCGAGGTCGAGCCAAGT 556222 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| |||||||| | || || ||||| |||||||||||||| ||||||||||| Sbjct 556223 GACTCCATCGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCGATCAG 556282 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | ||||||||||| || |||| | | | || || || ||| Sbjct 556283 CAGCGTCTCATCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACTCTCTCTGACTACAAC 556342 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || || || ||| ||||| Sbjct 556343 ATCCAGAAGGAGTCCACACTTCAT 556366 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || | || || |||| |||||| | | Sbjct 552743 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACACTCGAGGTCGAGCCAAGT 552802 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| |||||||| | || || ||||| |||||||||||||| ||||||||||| Sbjct 552803 GACTCCATCGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCGATCAG 552862 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| | || || | || ||||||||||| || |||| Sbjct 552863 CAGCGTCTCATCTTCGCTGGCAAGCAACTTGAGGATG 552899 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || | || || |||| |||||| | | Sbjct 552971 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACACTCGAGGTCGAGCCAAGT 553030 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| |||||||| | || || ||||| |||||||||||||| ||||||||||| Sbjct 553031 GACTCCATCGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCGATCAG 553090 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| | || || | || ||||||||||| || |||| Sbjct 553091 CAGCGTCTCATCTTCGCTGGCAAGCAACTTGAGGATG 553127 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || | || || |||| |||||| | | Sbjct 553199 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACACTCGAGGTCGAGCCAAGT 553258 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| |||||||| | || || ||||| |||||||||||||| ||||||||||| Sbjct 553259 GACTCCATCGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCGATCAG 553318 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| | || || | || ||||||||||| || |||| Sbjct 553319 CAGCGTCTCATCTTCGCTGGCAAGCAACTTGAGGATG 553355 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || | || || |||| |||||| | | Sbjct 555023 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACACTCGAGGTCGAGCCAAGT 555082 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| |||||||| | || || ||||| |||||||||||||| ||||||||||| Sbjct 555083 GACTCCATCGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCGATCAG 555142 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| | || || | || ||||||||||| || |||| Sbjct 555143 CAGCGTCTCATCTTCGCTGGCAAGCAACTTGAGGATG 555179 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || | || || |||| |||||| | | Sbjct 555479 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACACTCGAGGTCGAGCCAAGT 555538 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| |||||||| | || || ||||| |||||||||||||| ||||||||||| Sbjct 555539 GACTCCATCGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCGATCAG 555598 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| | || || | || ||||||||||| || |||| Sbjct 555599 CAGCGTCTCATCTTCGCTGGCAAGCAACTTGAGGATG 555635 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || | || || |||| |||||| | | Sbjct 555707 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACACTCGAGGTCGAGCCAAGT 555766 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| |||||||| | || || ||||| |||||||||||||| ||||||||||| Sbjct 555767 GACTCCATCGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCGATCAG 555826 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| | || || | || ||||||||||| || |||| Sbjct 555827 CAGCGTCTCATCTTCGCTGGCAAGCAACTTGAGGATG 555863 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || | || || |||| |||||| | | Sbjct 555935 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACACTCGAGGTCGAGCCAAGT 555994 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| |||||||| | || || ||||| |||||||||||||| ||||||||||| Sbjct 555995 GACTCCATCGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCGATCAG 556054 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| | || || | || ||||||||||| || |||| Sbjct 556055 CAGCGTCTCATCTTCGCTGGCAAGCAACTTGAGGATG 556091 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || | || || |||| |||||| | | Sbjct 556391 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACACTCGAGGTCGAGCCAAGT 556450 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| |||||||| | || || ||||| |||||||||||||| ||||||||||| Sbjct 556451 GACTCCATCGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCCGATCAG 556510 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | || ||||||||||| |||| | | | || || || ||| Sbjct 556511 CAGCGTCTTATCTTTGCTGGTAAGCAACTCGAGGATGGCCGCACTCTCTCAGACTACAAC 556570 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 556571 ATCCAGAAGGAATCCAC 556587 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || | || || |||| |||||| | | Sbjct 557168 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACACTCGAGGTCGAGCCAAGT 557227 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| |||||||| | || || ||||| |||||||||||||| ||||||||||| Sbjct 557228 GACTCCATCGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCCGATCAG 557287 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | || ||||||||||| |||| | | | || || || ||| Sbjct 557288 CAGCGTCTTATCTTTGCTGGTAAGCAACTCGAGGATGGCCGCACTCTCTCAGACTACAAC 557347 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 557348 ATCCAGAAGGAATCCAC 557364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429768864664035