Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq26231 87.8 1e-12 >seq26231 Length=1354672 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || ||||||||||| || ||||||||||| | Sbjct 556389 CCACCACGAAGCCTGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAG 556330 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | ||| ||||| ||| | || || ||||| || || ||| Sbjct 556329 AGAGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCGGGAGGG 556270 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | | ||| | ||||| Sbjct 556269 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTTACGTTCTCGATGGAGTCACTTGGCTCGA 556212 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || || || |||||||| || |||||||| Sbjct 556211 CCTCGAGTGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 556163 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || ||||||||||| || ||||||||||| | Sbjct 552285 CCACCACGAAGCCTGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAG 552226 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | ||| ||||| || | || || ||||| || || ||| Sbjct 552225 AGAGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGG 552166 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | | ||| | ||||| Sbjct 552165 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTTACGTTCTCGATGGAGTCACTTGGCTCGA 552108 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | |||||||| || ||||| || || |||||||| |||||||| ||| Sbjct 552107 CCTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTTG 552055 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || ||||||||||| || ||||||||||| | Sbjct 552969 CCACCACGGAGCCTGAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAG 552910 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | ||| ||||| || | || || ||||| || || ||| Sbjct 552909 AGAGTGCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGG 552850 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | | ||| | ||||| Sbjct 552849 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTTACGTTCTCGATGGAGTCACTTGGCTCGA 552792 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || || || |||||||| || |||||||| Sbjct 552791 CCTCGAGTGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 552743 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || ||||||||||| || ||||||||||| | Sbjct 553197 CCACCACGGAGCCTGAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAG 553138 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | ||| ||||| || | || || ||||| || || ||| Sbjct 553137 AGAGTGCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGG 553078 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | | ||| | ||||| Sbjct 553077 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTTACGTTCTCGATGGAGTCACTTGGCTCGA 553020 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || || || |||||||| || |||||||| Sbjct 553019 CCTCGAGTGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 552971 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || ||||||||||| || ||||||||||| | Sbjct 553425 CCACCACGGAGCCTGAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAG 553366 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | ||| ||||| || | || || ||||| || || ||| Sbjct 553365 AGAGTGCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGG 553306 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | | ||| | ||||| Sbjct 553305 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTTACGTTCTCGATGGAGTCACTTGGCTCGA 553248 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || || || |||||||| || |||||||| Sbjct 553247 CCTCGAGTGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 553199 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || ||||||||||| || ||||||||||| | Sbjct 553653 CCACCACGAAGCCTGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAG 553594 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | ||| ||||| || | || || ||||| || || ||| Sbjct 553593 AGAGTGCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGG 553534 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | | ||| | ||||| Sbjct 553533 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTTACGTTCTCGATGGAGTCACTTGGCTCGA 553476 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || || || |||||||| || |||||||| Sbjct 553475 CCTCGAGTGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 553427 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || ||||||||||| || ||||||||||| | Sbjct 553881 CCACCACGGAGCCTGAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAG 553822 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | ||| ||||| ||| | || || ||||| || || ||| Sbjct 553821 AGAGTGCGACCATCCTCAAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCGGGAGGG 553762 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | | ||| | ||||| Sbjct 553761 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTTACGTTCTCGATGGAGTCACTTGGCTCGA 553704 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || || || |||||||| || |||||||| Sbjct 553703 CCTCGAGTGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 553655 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || ||||||||||| || ||||||||||| | Sbjct 554109 CCACCACGAAGCCTGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAG 554050 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | ||| ||||| || | || || ||||| || || ||| Sbjct 554049 AGAGTGCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGG 553990 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | | ||| | ||||| Sbjct 553989 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTTACGTTCTCGATGGAGTCACTTGGCTCGA 553932 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || || || |||||||| || |||||||| Sbjct 553931 CCTCGAGTGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 553883 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || ||||||||||| || ||||||||||| | Sbjct 554337 CCACCACGAAGCCTAAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAG 554278 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | ||| || || ||| | ||||| ||||| || || ||| Sbjct 554277 AGAGTGCGACCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCGGGAGGA 554218 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | | ||| | ||||| Sbjct 554217 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTTACGTTCTCGATGGAGTCACTTGGCTCGA 554160 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || || || |||||||| || |||||||| Sbjct 554159 CCTCGAGTGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 554111 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || ||||||||||| || ||||||||||| | Sbjct 555249 CCACCACGGAGCCTGAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAG 555190 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | ||| ||||| || | || || ||||| || || ||| Sbjct 555189 AGAGTGCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGG 555130 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | | ||| | ||||| Sbjct 555129 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTTACGTTCTCGATGGAGTCACTTGGCTCGA 555072 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || || || |||||||| || |||||||| Sbjct 555071 CCTCGAGTGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 555023 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || ||||||||||| || ||||||||||| | Sbjct 555705 CCACCACGGAGCCTGAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAG 555646 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | ||| ||||| || | || || ||||| || || ||| Sbjct 555645 AGAGTGCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGG 555586 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | | ||| | ||||| Sbjct 555585 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTTACGTTCTCGATGGAGTCACTTGGCTCGA 555528 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || || || |||||||| || |||||||| Sbjct 555527 CCTCGAGTGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 555479 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || ||||||||||| || ||||||||||| | Sbjct 555933 CCACCACGGAGCCTGAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAG 555874 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | ||| ||||| || | || || ||||| || || ||| Sbjct 555873 AGAGTGCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGG 555814 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | | ||| | ||||| Sbjct 555813 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTTACGTTCTCGATGGAGTCACTTGGCTCGA 555756 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || || || |||||||| || |||||||| Sbjct 555755 CCTCGAGTGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 555707 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || ||||||||||| || ||||||||||| | Sbjct 556161 CCACCACGGAGCCTGAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAG 556102 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | ||| ||||| || | || || ||||| || || ||| Sbjct 556101 AGAGTGCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGG 556042 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | | ||| | ||||| Sbjct 556041 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTTACGTTCTCGATGGAGTCACTTGGCTCGA 555984 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || || || |||||||| || |||||||| Sbjct 555983 CCTCGAGTGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 555935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404930524192030