Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq26965 98.7 1e-15 seq26121 91.5 2e-13 seq26067 91.5 2e-13 >seq26965 Length=571932 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465 |||||||||||| ||||| || ||||| ||| ||||||| | ||||| || |||||| Sbjct 64102 CTCCATTGCAATCTGGAAGCCATAGAAGCATTTAGCTTCTGGTATCTGGACCTCTTGACT 64161 Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 || || ||||| ||||| |||||||| || |||||| |||||||| || || Sbjct 64162 GAACCTTTCTACCAGATTCTCATTGACGATCCCATCGCTGGCTGCAAAGAAGGC 64215 >seq26121 Length=543453 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| |||||||||||||| | || ||||||||||| || |||| ||||| || Sbjct 57987 GAATCTTTGATGTATGTATCGATGAGTAGTGAATACATTTCTGAGTGGATGTTCTCAATG 58046 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || || ||||| || |||||||| || ||||| | | ||| |||||||| Sbjct 58047 GCGATCTGGAACCCATAGAAACACCTGGCTTCTGCTACCTGGACTTCTTG 58096 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/169 (72%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||| || | ||| || | |||||||| ||||||||||| || |||| || Sbjct 56981 TCATTGGAGAAGGTAAGACCGGGCATGAGTCCTCGCTTCTTGAGCCAGAAGATTGCGGCG 57040 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCG--GCAA 93251 ||| || || || || || || ||||| |||||||| || ||||| | ||| ||| Sbjct 57041 AAAGAGCCTGAGAAGAAGATGCCCTCCACTGCTGCAAAGGCGACAATCC--TCGTCCCAA 57098 Query 93252 AATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCtttttt 93300 | | ||| | ||||| |||||| || |||||||| | ||||| || Sbjct 57099 AGTCAGCGCTGTCACTGCCGATCCAGTTCAAAGCCCACTGTGCTTTCTT 57147 >seq26067 Length=6056 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| |||||||||||||| | || ||||||||||| || |||| ||||| || Sbjct 4360 GAATCTTTGATGTATGTATCGATGAGTAGTGAATACATTTCTGAGTGGATGTTCTCGATG 4301 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || || ||||| || |||||||| || ||||| | | ||| |||||||| Sbjct 4300 GCGATCTGGAAACCATAGAAACACCTGGCTTCTGCTACCTGGACTTCTTG 4251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556638772638280