Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq26231 156 8e-33 seq26121 105 1e-17 >seq26231 Length=1354672 Score = 156 bits (172), Expect = 8e-33 Identities = 160/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| || |||||||| || || ||||| || | |||||||| | Sbjct 552266 CAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCAA 552207 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||||| || ||||| ||||| | || || ||||| || |||||||| ||||| || | Sbjct 552206 GTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCTTCTTTGTCCTGGA 552147 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||||| ||| |||||||| ||| || || || || | |||||||| || | Sbjct 552146 TCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTTGC 552087 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||||||||| || |||||||| Sbjct 552086 CGGTGAGGGTCTTGACAAAGATCTGCAT 552059 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || |||||||| || |||||||| || || ||||| || | ||||| || | ||| Sbjct 552489 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGACCATCCTCAAGTTGC 552430 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || ||||| | || || ||||| || |||||||| ||||| || ||||| Sbjct 552429 TTGCCAGCAAAGATGAGACGCTGCTGATCGGGAGGGATGCCTTCTTTGTCCTGGATCTTG 552370 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| ||| |||||||| ||| || ||| || || | |||||||| || || ||| Sbjct 552369 GCCTTTACGTTCTCGATGGAGTCACTTGGTTCGACCTCGAGTGTGATGGTCTTGCCTGTG 552310 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| |||||||| Sbjct 552309 AGGGTCTTGACGAAGATCTGCAT 552287 Score = 150 bits (166), Expect = 3e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || |||||||| || |||||||| || || ||||| || | ||||| || | ||| Sbjct 554541 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCAAGTTGC 554482 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || ||||| | || || ||||| || |||||||| ||||| || ||||| Sbjct 554481 TTGCCAGCAAAGATGAGACGCTGCTGATCGGGAGGGATGCCTTCTTTGTCCTGGATCTTG 554422 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| ||| |||||||| || || || || || | ||||||||||| || ||| Sbjct 554421 GCCTTTACGTTCTCGATGGAATCACTTGGCTCGACCTCGAGTGTGATGGTTTTGCCTGTG 554362 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| |||||||| Sbjct 554361 AGGGTCTTGACGAAGATCTGCAT 554339 Score = 147 bits (162), Expect = 4e-30 Identities = 155/203 (76%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || |||||| || |||||||| || || ||||| || | |||||||| | ||| Sbjct 550960 TGAAGTGTGGACC--TTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCTTCAAGTTGC 550903 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| ||||| | || || ||||| ||||||||||| ||||| || ||||| Sbjct 550902 TTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTGGATCTTG 550843 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| ||| |||||||| ||| || || || || | |||||||| || || ||| Sbjct 550842 GCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTTGCCGGTG 550783 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || |||||||| Sbjct 550782 AGGGTCTTGACAAAGATCTGCAT 550760 Score = 147 bits (162), Expect = 4e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 || || ||||| | || | |||| || || |||||||| || |||||||| || || || Sbjct 554337 CCACCACGAAGCCT-AAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGA 554279 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | ||||| || | ||||| || || || || || | || || ||||| || Sbjct 554278 GAGAGTGCGACCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCGGGAGG 554219 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||||||| ||||| || ||||| ||||| ||| |||||||| ||| || || || Sbjct 554218 AATGCCTTCTTTGTCCTGGATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGAC 554159 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || |||||||| |||||||| |||||||| Sbjct 554158 CTCGAGTGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 554111 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || ||||| || | || | || || ||||| || || |||||||| || || || Sbjct 557395 TCCACCACGAAGTCGGAGAACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCTGA 557336 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | ||||| || | ||||| || || || || || | || || ||||| || Sbjct 557335 GAGAGTGCGGCCATCCTCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCGGGAGG 557276 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||||||| ||||| || ||||| ||||| ||| |||||||| ||| || || || Sbjct 557275 AATGCCTTCTTTGTCCTGGATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGAC 557216 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || |||||||| |||||||| |||||||| Sbjct 557215 CTCGAGTGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 557168 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || ||||| || || |||||||| || || ||||| || | ||||| || | ||| Sbjct 556593 TGGAGAGTGGATTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCGAGTTGC 556534 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || || | || || ||||| ||||||||||| ||||| || ||||| Sbjct 556533 TTACCAGCAAAGATAAGACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTGGATCTTG 556474 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| ||| |||||||| ||| || || || || | |||||||| || || ||| Sbjct 556473 GCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTTGCCTGTG 556414 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| |||||||| Sbjct 556413 AGGGTTTTGACGAAGATCTGCAT 556391 Score = 136 bits (150), Expect = 7e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || |||||||| || |||||||| || || ||||| || | ||||| || | ||| Sbjct 554769 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCAAGTTGC 554710 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || || | || || ||||| ||||||||||| ||||| || ||||| Sbjct 554709 TTGCCAGCAAAGATAAGACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTGGATCTTG 554650 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| ||| ||| |||| || || || || || | |||||||| || || ||| Sbjct 554649 GCCTTTACGTTCTCAATGGAATCACTTGGCTCGACCTCGAGTGTGATGGTCTTGCCTGTG 554590 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| |||||||| Sbjct 554589 AGGGTTTTGACGAAGATCTGCAT 554567 Score = 116 bits (128), Expect = 7e-21 Identities = 149/204 (73%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || |||||||| || |||||||| || || ||||| || | ||||| || | |||| Sbjct 557144 TGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCAAGCTGC 557085 Query 68319 TTCCCGGCGAATATGAGTCTT-TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 || ||||| || || || | || || ||||| ||||||||||| |||| || ||||| Sbjct 557084 TTTCCGGCAAAGATAAGACCCCTGCTGATCGGGAGGAATGCCTTCTATGTCCTGGATCTT 557025 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||| | ||| ||| |||| || || || || || | |||| | | |||| || Sbjct 557024 GGCCCTTACGTTCTCAATGGAATCACTTGGCTCGACCTCGAGTGTGACGATCATTCCTGT 556965 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 |||||| |||||| | |||||||| Sbjct 556964 GAGGGTTTTGACGCAGATCTGCAT 556941 >seq26121 Length=543453 Score = 105 bits (116), Expect = 1e-17 Identities = 139/192 (72%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 10622 CAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAA 10681 || |||||| | || |||||||||||| |||||||||| | || | ||| |||||| Sbjct 58765 CAAGTTCTCATTGACGATGCCATCGCTGGCTGCAAAGAAAGCAAGAACATGCGAGATGAA 58824 Query 10682 GTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGAC 10741 ||| | ||| || || || || || | ||||| | | |||| | || | || Sbjct 58825 GTGTCTCTCTTCGTCCTTAAGATTGGC---CCAGTGGTCAAGGTCCTTGGACAGGTCAAC 58881 Query 10742 CTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTA 10801 |||||| |||||||||| | || ||||||||||||| | ||| | |||||| |||| Sbjct 58882 CTCCTCAGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTAGAACTGCCAGATGTCGTGGTA 58941 Query 10802 CCGGATGGGGAA 10813 | |||||||||| Sbjct 58942 CTGGATGGGGAA 58953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921254937628840