Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq26121 154 3e-32 seq29598 107 4e-18 >seq26121 Length=543453 Score = 154 bits (170), Expect = 3e-32 Identities = 170/224 (76%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| || | |||||| |||| ||| | | ||||| || | ||||| | ||| Sbjct 57183 CTGTTCAACGCAGTTGAGACGTTGCCATGCGTAACCAAGAAAGCACAGTGGGCTTTGAAC 57124 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 ||||||| ||| | ||| || || |||| | || |||||| | || || ||| Sbjct 57123 TGGATCGGCAGTGACAGCGCTGACTTTGGGACGAGGATTGTCGCCTTTGCAGCAGTGGAG 57064 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGAT 42787 |||||||||||||| ||| | |||||| | ||||||||||||||| || ||| || || Sbjct 57063 GGCATCTTCTTCTCAGGCTCTTTCGCCGCAATCTTCTGGCTCAAGAAGCGAGGACTC-AT 57005 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 |||||| || |||||||| || |||||||||||||| ||||||| Sbjct 57004 GCCCGGTCTTACCTTCTCCAATGAACTCATCAGCAGAGACGAGG 56961 >seq29598 Length=358761 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 || |||||||| |||||||| |||||||| |||||| ||||| ||| || || ||| Sbjct 197317 TTGACCACCTGGAACTCTCCTGACAGCACACGGCGCGTGTAGATGTTACTCGTGTAAGGC 197376 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 |||||| ||| |||| ||||| ||||| || ||| || ||||||||||| | | Sbjct 197377 TCGATGGCCTCATTGTTACCCAGGATCTGAGCGGTGGATGCGGTCGGCATGGGAGCAAGG 197436 Query 244211 AGCAGACTGTTCCTCACGCCGTGC 244234 || |||||||| | ||||||||| Sbjct 197437 AGGAGACTGTTTCGGACGCCGTGC 197460 Score = 93.3 bits (102), Expect = 8e-14 Identities = 133/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 244970 GGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATC 245029 |||||||| || |||| || || | | | ||||| | |||||| | || |||||| Sbjct 200536 GGGCACATCAGGGTCCAGTCTCCATCAGCTTCCACCCTTTTCATGAATAAATCTGGGATC 200595 Query 245030 CAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCT-CAG 245088 ||||| | | ||| ||||||| | ||||||||| ||| || ||||||| | ||| Sbjct 200596 CAGAGACCGTAGAACAGGTCCCGAGCCCTCTGCTCCTCCTTACCGTGGTTCTTCTTACAG 200655 Query 245089 CTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGG 245148 || | |||||||||| ||| | ||||| ||||||| ||||| |||| || || || Sbjct 200656 -TCTAGGAAGTCAAAGATGTCTGCATGCCACGGCTCCAGGTAGATTGCGAAAGCACCAGG 200714 Query 245149 CCGCT 245153 |||| Sbjct 200715 ACGCT 200719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943962680156720