Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_009540.1 Length=49902 Score E Sequences producing significant alignments: (Bits) Value seq28821 150 6e-32 >seq28821 Length=465073 Score = 150 bits (166), Expect = 6e-32 Identities = 347/508 (68%), Gaps = 16/508 (3%) Strand=Plus/Minus Query 45966 TCCGGCATCACAAAACCGTTACCCGTCCAAAGGCAAGtttttttGGTGTACGCATCGCGA 46025 |||||||| || || ||| | ||||| || ||||| || || | ||| |||||||| Sbjct 124317 TCCGGCATAACGAAGTCGTCAGAGGTCCACAGACAAGTCTTCTTCGGGTAAGCATCGCGC 124258 Query 46026 GCAGGAATG-ATTTCAGGAAAGTGAGGATGTTTATCATCTTCCGGCA-ACAGACCGCCAA 46083 | | || | || |||| | ||||| |||| || || | | || |||||| Sbjct 124257 GGCGCGATATACATCGGGAACCAG-GGATGCGCGTCATTCTCAGGAAGATAG-CCGCCAT 124200 Query 46084 ACGCGCAAGGATGAAATATAAAATCGGGTTGCCGCCACATCGACGACAGGACGCTAACAG 46143 || | || |||| || || |||| | ||| || ||||||||||| || | Sbjct 124199 ACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCATGCAGATGACAGGACGCTCACCG 124140 Query 46144 GATTCTCGATCACGTATGGCACATTGAACCAATCCGCAATTTCAGCCGCAAT-CTTGCAT 46202 ||||||| || | ||| | ||| | | ||| |||| | || ||||| | ||| Sbjct 124139 GATTCTCAATTATGTAAGTCACGCCCATGCTATCGCCAATGTTCGCGGCAATACGGGCA- 124081 Query 46203 GTTGAAACTGCCTTATCCTGGAATAGCGGATCACGTTCACGCTTTGCGGAAAAGTGACGC 46262 || | || || || ||||||||||||||||||||||||||||| || ||| || || Sbjct 124080 GTAGCGACAGCTTTCTCCTGGAATAGCGGATCACGTTCACGCTTGCTGGCAAAATGGCGA 124021 Query 46263 GAACCGCTAACAGCTAAATCAGTGCATGGAGGAAACGCGATCACAAAATCAGGCTTGCCG 46322 | ||| |||||||| | |||||||||||| | || || || | |||||| || ||| | Sbjct 124020 GCACCACTAACAGCAAGGTCAGTGCATGGATGGAAGGCCATAATAAAATCCGGTTTGTCA 123961 Query 46323 TAAACCTCATTGCGAGCCT-TAAAGCT-GAAATCTGAATCAATCCAAACGTTCACATACT 46380 || || | |||| | | | | | | ||| | |||||| | ||||||||||||| Sbjct 123960 TACACACC--CGCGATCGTATCACGTTCGAACTTCTCATCAATGAAGACGTTCACATACT 123903 Query 46381 CAATGTTGGGATGACTTACGC--GCACTGAA---TG-GTAATCACCATGATCGGCATCAT 46434 ||||||| ||||| ||| | || || | || |||||| || |||||||| | | Sbjct 123902 CAATGTTCGGATGCTCTACCCTGGCGTTGTACTTTGCGTAATCTCCGTGATCGGCTCCGT 123843 Query 46435 CATAATTGAAACAGATTACTTTGTGACC 46462 || | ||||| || || || || ||||| Sbjct 123842 CAAAGTTGAAGCACATCACCTTATGACC 123815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159504360543696