Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq26231 158 3e-33 >seq26231 Length=1354672 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || |||||||| | ||| || || ||||| || ||||| | | Sbjct 552513 CCACCACGGAGCCTGAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAG 552454 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | ||| || || || ||||| |||||||| ||| ||| Sbjct 552453 AGAGTGCGACCATCCTCAAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCGGGAGGG 552394 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| |||||||| || || || ||||| || || || || || | ||| || Sbjct 552393 ATGCCTTCTTTGTCCTGGATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGTTCGACC 552334 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || || ||||||||||| |||||||| Sbjct 552333 TCGAGTGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 552287 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || |||||||| | ||| || || ||||| || ||||| | | Sbjct 554565 CCACCACGGAGCCTGAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAG 554506 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | ||| || || || ||||| |||||||| ||| ||| Sbjct 554505 AGAGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCGGGAGGG 554446 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| |||||||| || || || ||||| || || ||||| || | || || Sbjct 554445 ATGCCTTCTTTGTCCTGGATCTTGGCCTTTACGTTCTCGATGGAATCACTTGGCTCGACC 554386 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || || || || || ||||||||||| |||||||| Sbjct 554385 TCGAGTGTGATGGTTTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 554339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179172298471166