Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq26121 89.7 6e-13 seq29598 87.8 2e-12 >seq26121 Length=543453 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||||||||| |||||| || || |||||||| || ||||||| Sbjct 56961 CCTCGTCTCTGCTGATGAGTTCATTGGAGAAGGTAAGACCGGGCATGAGTCCTCGCTTCT 57020 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 | | |||||| || || || || || ||||||||||| |||||||| Sbjct 57021 TGAGCCAGAAGATTGCGGCGAAAGAGCCTGAGAAGAAGATGCCCTCCAC 57069 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || ||||||| |||||| |||||||||||||| || ||||| ||| || ||||| Sbjct 55690 GTATTCACCAACCCTCTTCTCAAAGAAGTTTGTCTTTCCTTCCAATGAGATGTTTTCCAT 55749 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAAT 125847 || ||||||||||||| | ||||| || Sbjct 55750 GAAGTCAAATGGGTTCTCTACCTTCCAGAT 55779 >seq29598 Length=358761 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 113848 CTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGAC 113907 |||||| || | ||||| ||||| || | | || || | |||||| | |||||| Sbjct 197262 CTTCATTTCATCAGACCACAGACCCATATCAGTCAGGTCTCTTAGGAGATGATGATTGAC 197321 Query 113908 AACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAA 113967 || ||||| || | || || | | ||||| || ||||||| ||||| | Sbjct 197322 CACCTGGAACTCTCCTGACAGCACACGGCGCGTGTAGATGTTACTCGTGTAAGGCTCGAT 197381 Query 113968 GCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAG 114027 | |||||||||||||| ||| || |||||||| || || |||||||| || | ||| || Sbjct 197382 GGCCTCATTGTTACCCAGGATCTGAGCGGTGGATGCGGTCGGCATGGGAGCAAGGAGGAG 197441 Query 114028 GCTGTTACGGA 114038 ||||| |||| Sbjct 197442 ACTGTTTCGGA 197452 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 114514 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 114573 |||||||| || || ||||||| ||| | ||| |||||||||||||| | ||| || Sbjct 199678 GTACTCTACGATCTCTGTACACAGATTACTGCACTTGATGGTGCCCAAGTTTTGTTGGTT 199737 Query 114574 TGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGA 114633 ||| ||||||| |||||||| | |||||| || || || ||||| || ||||| Sbjct 199738 ACTCTTCTTGTTACAATGGTCCTTGTAGACCATGTAAGGGGTACCAGTCTCTGTCTGGGA 199797 Query 114634 CTTGAGAATAGCCTTCCA 114651 || || || || | ||| Sbjct 199798 CTCGATGATGGCATACCA 199815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597115427652760