Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq26231 123 2e-23 seq25132 84.2 2e-11 >seq26231 Length=1354672 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||||| || ||||||| || || || || || |||||||| |||| Sbjct 554338 ACCACCACGAAGCCTAAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGA 554279 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | || ||||| ||||| || ||| | || || |||||||| |||||||| Sbjct 554278 GAGAGTGCGACCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCGGGAGG 554219 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| |||||||| || || || || |||||| ||| | | |||| | || || Sbjct 554218 AATGCCTTCTTTGTCCTGGATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGAC 554159 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| || | ||||| ||||| || ||||| Sbjct 554158 CTCGAGTGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 554111 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || || || ||||| | || || || || || |||||||| |||| Sbjct 554794 ACCACCACGGAGCCTGAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGA 554735 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | || ||||| |||||||| ||| | || || |||||||| |||||||| Sbjct 554734 GAGAGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGATCGGGAGG 554675 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| |||||||| || || || || |||||| ||| | | ||||| | || || Sbjct 554674 AATGCCTTCTTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGAATCACTTGGCTCGAC 554615 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| || | ||||| ||||| || ||||| Sbjct 554614 CTCGAGTGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 554567 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || || || ||||||| || || || || || |||||||| |||| Sbjct 552286 ACCACCACGAAGCCTGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGA 552227 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | |||||||| |||||||| || | ||||| |||||||| |||||||| Sbjct 552226 GAGAGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGG 552167 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || |||||||| || || || || |||||| ||| | | |||| | || || Sbjct 552166 GATGCCTTCTTTGTCCTGGATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGAC 552107 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||||||||| | || || || || || ||||| || Sbjct 552106 CTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 552056 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||| || || |||||||| |||| || ||||| | || Sbjct 556602 AGAACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCC 556543 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||| || ||| | || || |||||||| ||||||||||| |||||||| || Sbjct 556542 TCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCC 556483 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || |||||| ||| | | |||| | || || || | || | |||| Sbjct 556482 TGGATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTC 556423 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | ||||| ||||| || ||||| Sbjct 556422 TTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 556391 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||| || || |||||||| |||| || ||||| | || Sbjct 557379 AGAACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCC 557320 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||| || ||| | || || |||||||| ||||||||||| |||||||| || Sbjct 557319 TCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCC 557260 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || |||||| ||| | | |||| | || || || | || | |||| Sbjct 557259 TGGATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTC 557200 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | ||||| ||||| || ||||| Sbjct 557199 TTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 557168 Score = 105 bits (116), Expect = 7e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | || ||||| | |||||||| |||||||| || | ||| Sbjct 550947 TTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATG 550888 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || |||||||| ||||||||||| |||||||| || || || || |||||| ||| Sbjct 550887 AGACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTTACGTTCTCG 550828 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | | |||| | || || || | || | |||||||||||| | || || || || Sbjct 550827 ATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAG 550768 Query 64436 ATTTGCATTTT 64446 || ||||| || Sbjct 550767 ATCTGCATGTT 550757 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 ||||||| || || || || || |||||||| || | || ||||| | || |||||| Sbjct 557147 AGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCAAGC 557088 Query 64298 TGCTTGCCGGCATAAATGAG-CCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTAT 64356 ||||| |||||| | || || || |||||| ||||||||||| |||||| | || || || Sbjct 557087 TGCTTTCCGGCAAAGATAAGACCCCTGCTGATCGGGAGGAATGCCTTCTATGTCCTGGAT 557028 Query 64357 TTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCC 64416 || | |||| ||| | | ||||| | || || || | || ||| || | || Sbjct 557027 CTTGGCCCTTACGTTCTCAATGGAATCACTTGGCTCGACCTCGAGTGTGACGATCATTCC 556968 Query 64417 GGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||||| ||| | || ||||| Sbjct 556967 TGTGAGGGTTTTGACGCAGATCTGCAT 556941 >seq25132 Length=791789 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || ||||| ||||| | ||||| || || || |||||||| || | | |||||| | Sbjct 199773 CTCAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 199832 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 ||||| |||||||||||||| | || | |||||||| |||||||| || ||| Sbjct 199833 TCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCGGGAGGGATACCT 199886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499445585372680