Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_011645.1 Length=37456 Score E Sequences producing significant alignments: (Bits) Value seq21096 237 4e-58 >seq21096 Length=1089 Score = 237 bits (262), Expect = 4e-58 Identities = 436/631 (69%), Gaps = 11/631 (2%) Strand=Plus/Plus Query 12522 AATTAGCATTCTTTAGTTTTAACGGAAAAAGAAATGATAAGGTGATTCCATTACAGGGCG 12581 ||||||| ||||||||||||||||| ||||| ||| || || |||||| | ||||| Sbjct 122 AATTAGC-TTCTTTAGTTTTAACGGGAAAAGGAATCCAAATGTAATTCCACTGCAGGGTA 180 Query 12582 TTAAACGTCCTGCGTGGGCCCCTATTGAACGAACATTCTTAGAAGTACCGCATTACCCTG 12641 || || ||||| ||||| ||| | || | | || | ||||| ||||||| || | Sbjct 181 AAAAGCGCCCTGCATGGGCTCCTTTGGATCATATGTTTCTTGAAGTCTCGCATTATCCAG 240 Query 12642 GCGGTCGTTTATTGCGTACAGAAACGAAAATGAGAGAAATTTTAATACCTGTAGCATTCA 12701 | ||| | ||| | || ||| |||| ||||||||| | |||||| | ||| | ||| | Sbjct 241 GAGGTAGGTTACTACGCACACAAACTAAAATGAGAAAGATTTTAGTTCCTATTGCACTAT 300 Query 12702 TCTATGAGACATCGGAACAAGGCGAAAAATTAAAAGAAGAATTGGCCGATTGGCTTTATA 12761 | ||||| || | ||| ||| |||||| ||||||||||| | || |||||||| || Sbjct 301 TATATGACTCAGCTGAAGAAGCTGAAAAACTAAAAGAAGAAATAGCAGATTGGCTCGTTA 360 Query 12762 CAGATCAACCAGCCGAATTAATTTTCGATGATGAAAAAGAACGTACTTATTTAGCTGTTA 12821 | |||||||| ||| | ||||| |||||||||||||| ||||| | ||||||||| Sbjct 361 CGGATCAACCGTGCGAGCTTATTTTTGATGATGAAAAAGATCGTACGTTTTTAGCTGTCG 420 Query 12822 TTGATGATGAACTT--GATCCAAACCAATTAGTCGATATTGGACAAGGTGTGTTGAAATT 12879 | ||||| ||||| ||| | | || ||||| ||| | || ||||| || | || Sbjct 421 TAGATGA--AACTTTAGATTTAGAGCAGTTAGTTGATCTAGGTGAAGGTACTTTAACTTT 478 Query 12880 TATATGCCCTATGCCCTACAAATTAGGAAAAACACAAAATGTAGAATTCAAACAAGATTC 12939 || || || ||||| || || ||||||||| |||| || || || ||| ||||| Sbjct 479 CATTTGTCCAATGCCATATAAGTTAGGAAAAGAGCAAACGGTTGACTTTAAAAAAGAT-- 536 Query 12940 ATCATCGGAACAAAACGCATATTTCACAAATAAAGGCACTATAGAAGCAAAGCCGATCAT 12999 | | || | || || || ||||||||| ||| | | | || || ||||| Sbjct 537 GTTAGTGG-GTTAGTTGCTAATGTCCAAAATAAAGGAACTGTTCATTCTAACCCTATCAT 595 Query 13000 TGAATTAGAAATGACGAAACCAGCGACAAACCTTGATGTATGGTTTGG-AAACTACCCT- 13057 ||| | || || ||||||||| || || || |||||||| || || | | Sbjct 596 TGAGATTGATATTACGAAACCAAATACTTTTCTAGACGTATGGTTCGGCGGGGTATCTTT 655 Query 13058 -AATGAGCGCCAATATTTCCGCATTGGTCAACCTATGTCAATTGAAGATAAGCCAGTACA 13116 | ||| || | ||||| || || ||| || | || || || ||||| ||| | Sbjct 656 AAGTGATCGAGATTATTTTCGTATCGGTATGCCACTAAAAACTGTGGAAAAGCCTGTAGA 715 Query 13117 AGAAAATGAGCGCGTGTTATGGGATGAAATG 13147 | ||| | || | ||||||||||||||| Sbjct 716 AAGGAATCAACGTATATTATGGGATGAAATG 746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119692246166052