Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_012223.2 Length=44899 Score E Sequences producing significant alignments: (Bits) Value seq28821 93.3 1e-14 >seq28821 Length=465073 Score = 93.3 bits (102), Expect = 1e-14 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 27578 TCTCTGGTATACGGAAGCCGTTGCCGGTCCATAAGCAGGTCAGCTTCGGATATGAATCGC 27637 |||| || ||| |||| ||| |||||| | || ||| |||||| || | ||||| Sbjct 124319 TCTCCGGCATAACGAAGTCGTCAGAGGTCCACAGACAAGTCTTCTTCGGGTAAGCATCGC 124260 Query 27638 G-GGCGTTGATGTATTCCGGGAAGAGCGGGTGCACGTCATCCTCCGGCAAATAGCCGCCA 27696 | |||| ||| || |||||| || ||| |||||| ||| || | |||||||||| Sbjct 124259 GCGGCGC-GATATACATCGGGAACCAGGGATGCGCGTCATTCTCAGGAAGATAGCCGCCA 124201 Query 27697 TACTCCCACGGGTCAAACGAGTGGTCCGGCTTACGCCATTGAGTGGAGAGCACGCTGCGC 27756 |||||||| || | || ||||| | || || | |||| || || || ||||| | Sbjct 124200 TACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCATGCAGATGACAGGACGCTCACC 124141 Query 27757 GGATTCTCAATCATATATGGCAC 27779 ||||||||||| || || | ||| Sbjct 124140 GGATTCTCAATTATGTAAGTCAC 124118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143500824609954