Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq26121 98.7 1e-15 seq29598 86.0 8e-12 >seq26121 Length=543453 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||||||||| |||||| ||||| |||||||| || ||||||| Sbjct 56961 CCTCGTCTCTGCTGATGAGTTCATTGGAGAAGGTAAGACCGGGCATGAGTCCTCGCTTCT 57020 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 | | |||||| || || || ||||| ||||||||||| |||||||| Sbjct 57021 TGAGCCAGAAGATTGCGGCGAAAGAGCCTGAGAAGAAGATGCCCTCCAC 57069 >seq29598 Length=358761 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||| ||||||| ||||| | | |||||||||||||| ||| || || ||||| Sbjct 197356 TAGATGTTACTCGTGTAAGGCTCGATGGCCTCATTGTTACCCAGGATCTGAGCGGTGGAT 197415 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGA 115999 || || |||||||| || | ||| || ||||| |||| Sbjct 197416 GCGGTCGGCATGGGAGCAAGGAGGAGACTGTTTCGGA 197452 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 |||||||| || || ||||||| ||| | ||| |||||||||||||| | ||| || Sbjct 199678 GTACTCTACGATCTCTGTACACAGATTACTGCACTTGATGGTGCCCAAGTTTTGTTGGTT 199737 Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 ||| ||||||| |||||||||| ||| || || || || ||||| || ||||| Sbjct 199738 ACTCTTCTTGTTACAATGGTCCTTGTAGACCATGTAAGGGGTACCAGTCTCTGTCTGGGA 199797 Query 116595 CTTGAGAATAGCCTTCCA 116612 || || || || | ||| Sbjct 199798 CTCGATGATGGCATACCA 199815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613262587010520