Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq26231 98.7 1e-15 seq25132 96.9 4e-15 >seq26231 Length=1354672 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| | || || || |||||||| || || Sbjct 554530 CTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAA 554471 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| |||| || | || || |||||| |||||| ||| | | Sbjct 554470 GATGAGACGCTGCTGATCGGGAGGGATGCCTTCTTTGTCCTGGATCTTGGCCTTTACGTT 554411 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | | || || | || || || | |||||||||||||| || || || || || Sbjct 554410 CTCGATGGAATCACTTGGCTCGACCTCGAGTGTGATGGTTTTGCCTGTGAGGGTCTTGAC 554351 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 554350 GAAGATCTGCAT 554339 >seq25132 Length=791789 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 || ||||||||| | || |||||| ||||| ||||||||||| || ||||| | || Sbjct 199775 CAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 199834 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 || ||||||||||||||||| ||||| |||||||| |||| Sbjct 199835 TTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCGG 199875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565013032384440