Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3426 111 6e-19 seq9878 107 8e-18 seq25133 93.3 2e-13 seq24976 84.2 9e-11 seq14889 84.2 9e-11 >seq3426 Length=329852 Score = 111 bits (122), Expect = 6e-19 Identities = 260/392 (66%), Gaps = 19/392 (5%) Strand=Plus/Minus Query 451222 AGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAA 451281 ||| |||| || || | || || || ||||| || |||||| | || || ||||| Sbjct 297045 AGGAGAAAAGAAGACAATGGCACCAGAGGAAATCAGCTCCATGGTTTTGACCAAGATGAA 296986 Query 451282 AGAAACAGCAGAACAATATATTGGTTCTCCAG----TTACTGATGCAGTAATTACTGTTC 451337 || ||||| || ||| |||| |||| | || ||||| || | ||||||| Sbjct 296985 GGAGACAGCTGAGGCTTATCTTGG----CCAGAAGATCACCGATGCCGTCGTCACTGTTC 296930 Query 451338 CCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTT 451397 ||||||| ||||| |||||||| || || || || || || ||||| || || || Sbjct 296929 CCGCTTACTTCAACGATGCACAGCGACAGGCGACGAAGGACGCAGGTGTGATCGCAGGGC 296870 Query 451398 TAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAA 451457 | || || || |||| || || || || || || || || ||||| || ||||| | Sbjct 296869 TCAACGTCCTCAGAATCATCAACGAGCCCACCGCTGCCGCCCTAGCTTACGGACTCG--- 296813 Query 451458 AATCAAAAGAAACAGAA----GaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 | ||||| | ||| || || || | | | || ||| | ||||| || || Sbjct 296812 ----ATAAGAAGCTGAAGGGGGAGCAACATGTCCTCATCTTCGATCTCGGTGGTGGTACG 296757 Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGT 451573 ||| || | || | || || |||||| | |||||||| ||| | || ||| Sbjct 296756 TTCGATGTCTCGATCCTGGCCATCGATGATGGGATGTTTGAAGTGAAGTCGACAGCCGGT 296697 Query 451574 GATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || |||||||| ||||| ||||| ||||||| Sbjct 296696 GACACTCATCTCGGAGGAGAAGACTTTGATAA 296665 Score = 107 bits (118), Expect = 8e-18 Identities = 201/288 (70%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAG--GTT 452048 ||||||||||||| |||||| ||||||||||| || ||||| |||| || | | | Sbjct 296280 AATCCTGATGAAGTTGTTGCCTATGGTGCTGCTGTCCAAGCTACTATCCTCTCTGGCGAC 296221 Query 452049 CAGAT-GATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGA 452107 ||||| || |||||| | |||| |||| |||| ||||| | ||||| ||||||||| Sbjct 296220 CAGATCGAAAAAAAATCA-AAGATGTTCTTCTAGTCGATGTGGCTCCTCTCTCTCTTGGA 296162 Query 452108 GTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAAC-TTCTATTCCTTG 452166 |||| ||||| || || ||||||| || | ||| | ||||||| | ||| Sbjct 296161 ATTGAGACAGCAGGAGGTGTGATGACAAAGCTCATTGA--GAGGAACACAAGAATCC--C 296106 Query 452167 TAAAAAG---AGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCA 452223 | |||| | || ||||| | || ||| ||||| |||| || || || || Sbjct 296105 AACAAAGGCAACCCAGACATTCACAACCTACTCTGACAACCAGCCAGCCGTCACCATCCA 296046 Query 452224 AGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGG 452271 ||| | ||||||||| | || ||||| ||| |||||| ||| || Sbjct 296045 AGTACTCGAAGGAGAAAGAGCTATGACCAAAGACAATAATCGACTTGG 295998 Score = 102 bits (112), Expect = 3e-16 Identities = 258/389 (66%), Gaps = 14/389 (4%) Strand=Plus/Plus Query 451222 AGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAA 451281 ||| |||| || || | || || || ||||| || ||||| | || || ||||| Sbjct 309393 AGGAGAAAAGAAGACAATGGCACCAGAGGAAATCAGCTCCATGGTCTTGACCAAGATGAA 309452 Query 451282 AGAAACAGCAGAACAATATATTGGTTCTCCAGTT-ACTGATGCAGTAATTACTGTTCCCG 451340 || ||||| || ||| |||| | ||| | || ||||| || | |||||||||| Sbjct 309453 GGAGACAGCTGAGGCTTATCTTGGC-CAGCAGATCACCGATGCCGTCGTCACTGTTCCCG 309511 Query 451341 CTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAA 451400 |||| ||||| |||||||| || || || || || || ||||| || || || | | Sbjct 309512 CTTACTTCAACGATGCACAGCGACAGGCGACGAAGGACGCAGGTGTGATCGCAGGGCTCA 309571 Query 451401 ATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAAT 451460 | || || |||| || || || || || | | || ||||| || ||||| | Sbjct 309572 ACGTCCTCAGAATCATCAACGAGCCCACCGTGCCCGCCCTAGC-TACGGACTCG------ 309624 Query 451461 CAAAAGAAACAGAAG----aaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCAT 451516 | ||||| | |||| | ||| || | | | |||| | ||||||| || || Sbjct 309625 -ATAAGAAGCTGAAGGGGCAGAAATATGTCCTCATCTTTGTTCTTGGTGGTGGTACGTTC 309683 Query 451517 GATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGAT 451576 ||| || | || | || || |||||| | || ||||| ||| | || |||||| Sbjct 309684 GATGTCTCGATCCTGGCCATCGATGATGGGATGTTCGAAGTGAAGTCGACAGCCGGTGAT 309743 Query 451577 ACTCATCTAGGAGGTGAAGATATTGATAA 451605 || ||||| ||||| ||||| ||||||| Sbjct 309744 ACACATCTCGGAGGAGAAGACTTTGATAA 309772 Score = 100 bits (110), Expect = 1e-15 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 451222 AGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAA 451281 ||| |||| || || | || || || ||||| || ||||| | || || ||||| Sbjct 304505 AGGAGAAAAGAAGACAATGGCACCAGAGGAAATCAGCTCCATGGTCTTGACCAAGATGAA 304446 Query 451282 AGAAACAGCAGAACAATATATTGGTTCTCCAGTT-ACTGATGCAGTAATTACTGTTCCCG 451340 |||||||| ||| ||| |||| | ||| | || ||||| || || |||||||||| Sbjct 304445 GGAAACAGCTGAAGCTTATCTTGGC-CAGCAGATCACCGATGCCGTCATCACTGTTCCCG 304387 Query 451341 CTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAA 451400 |||| ||||| |||||||| || || ||||| || || ||||| || || || | | Sbjct 304386 CTTACTTCAACGATGCACAGCGACAGGCAACGAAGGACGCAGGTGTGATCGCAGGGCTCA 304327 Query 451401 ATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 | || || |||| || || || || || || || || || || || ||||| Sbjct 304326 ACGTCCTCAGAATCATCAACGAGCCCACCGCTGCCGCCCTCGCCTACGGACT 304275 Score = 93.3 bits (102), Expect = 2e-13 Identities = 194/285 (68%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAG--GTT 452048 |||||||||||||||||||| ||||||||| | | ||||| || || || | | | Sbjct 310158 AATCCTGATGAAGCTGTTGCCTATGGTGCTTCTTTCCAAGCTGCCATCCTCTCTGGCGAC 310217 Query 452049 CAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAG 452108 |||| | || || | |||| |||| |||| ||||| | ||||| ||||||||| Sbjct 310218 CAGAGCA--AAGAAATCAAAGATGTTCTTCTAGTCGATGTGGCTCCTCTCTCTCTTGGAA 310275 Query 452109 TTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGA--ACTTCTATTCCTTG 452166 |||| ||||| || || ||||||| || | ||| | ||||| || || || Sbjct 310276 TTGAGACAGCAGGAGGTGTGATGACAAAGCTCATTGA--GAGGAACACAAGAATCCCAAC 310333 Query 452167 TAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGT 452226 ||| | || ||||| | || ||| ||||| |||| || || || ||||| Sbjct 310334 AAAAGCAACCCAGACATTCACAACCTACTCTGACAACCAGCCAGCCGTTACCATCCAAGT 310393 Query 452227 GTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGG 452271 | ||||||||| | || ||||| ||| |||||| ||| || Sbjct 310394 ACTCGAAGGAGAAAGAGCTATGACCAAAGACAATAATCGACTTGG 310438 >seq9878 Length=68244 Score = 107 bits (118), Expect = 8e-18 Identities = 247/370 (67%), Gaps = 13/370 (4%) Strand=Plus/Minus Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 || || || ||||| ||||||||| || ||||| | || || ||||| || ||||| Sbjct 53036 AAGACATTGGCTCCAGAAGAAATTAGCTCGATGGTCTTGACCAAGATGAAGGAGACAGCT 52977 Query 451292 GAACAATATATTGGTTCTCCAGTT-ACTGATGCAGTAATTACTGTTCCCGCTTATTTCAA 451350 || ||| |||| | ||| | || ||||| || || |||||||||||||| ||||| Sbjct 52976 GAGGCTTATCTTGGC-CAGCAGATCACCGATGCTGTCATCACTGTTCCCGCTTACTTCAA 52918 Query 451351 TGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCG 451410 |||| ||| || || || || || || ||||| || || || | || || || | Sbjct 52917 CGATGAACAGCGACAGGCGACGAAGGACGCAGGTGTGATCGCAGGGCTCAACGTCCTCAG 52858 Query 451411 AATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC 451470 ||| || || || || || || || || ||||| || ||||| | | ||||| | Sbjct 52857 AATCATCAACGAGCCCACCGCTGCCGCCCTAGCTTACGGACTCG-------ATAAGAAGC 52805 Query 451471 AGAA----GaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTG 451526 ||| || || || | | | || ||| | ||||| || || ||| || Sbjct 52804 TGAAAGGGGAGCAACATGTCCTCATCTTCGATCTCGGTGGTGGTACGTTCGATGTCTCGA 52745 Query 451527 TACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAG 451586 | || ||||| |||||| | || ||||||| | || |||||||| ||||| | Sbjct 52744 TCCTGGTCATTGATGATGGGATCTTCGAAGTAATTTCGACAGCCGGTGATACACATCTCG 52685 Query 451587 GAGGTGAAGA 451596 |||| ||||| Sbjct 52684 GAGGAGAAGA 52675 Score = 91.5 bits (100), Expect = 6e-13 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGT--T 452048 |||||||||||||||||||||||||||||||| || ||||| || || || | ||| Sbjct 300 AATCCTGATGAAGCTGTTGCATATGGTGCTGCTGTCCAAGCTGCCATCCTCTCTGGTGAC 359 Query 452049 CAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAG 452108 |||| ||| || | ||| |||| |||| |||| || ||||| |||||||| Sbjct 360 CAGA--GCGAAGAAATCAAAGACGTTCTTCTAGTCCATGTGACTCCTCTTTCTCTTGGTA 417 Query 452109 TTGAAACAGCTGGTGGAATGATGACTAA 452136 |||| ||||| || || || |||| || Sbjct 418 TTGAGACAGCAGGAGGTGTGGTGACAAA 445 >seq25133 Length=13612 Score = 93.3 bits (102), Expect = 2e-13 Identities = 122/166 (73%), Gaps = 6/166 (4%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGT--T 452048 |||||||||||||||||||||||||||||||| || ||||| || || || | ||| Sbjct 1205 AATCCTGATGAAGCTGTTGCATATGGTGCTGCTGTCCAAGCTGCCATCCTCTCTGGTGAC 1146 Query 452049 CAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAG 452108 |||| ||| || | ||| |||| |||| |||| || ||||| |||||||| Sbjct 1145 CAGA--GCGAAGAAATCAAAGACGTTCTTCTAGTCCATGTGACTCCTCTTTCTCTTGGTA 1088 Query 452109 TTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAAC 452154 |||| ||||| || || ||||| | || | ||| || |||||| Sbjct 1087 TTGAGACAGCAGGAGGTGTGATGTCAAAGCTCATTGAA--AGGAAC 1044 >seq24976 Length=498491 Score = 84.2 bits (92), Expect = 9e-11 Identities = 120/166 (72%), Gaps = 6/166 (4%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAG--GTT 452048 |||||||||||||||||||| ||||||||||| || ||||| || || || | | | Sbjct 43345 AATCCTGATGAAGCTGTTGCCTATGGTGCTGCTGTCCAAGCTGCCATCCTCTCTGGCGAC 43286 Query 452049 CAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAG 452108 |||| ||| || | |||| |||| |||| ||||| || ||||| |||||||| Sbjct 43285 CAGA--GCGAAGAAATCAAAGATGTTCTTCTAGTCGATGTGACCCCTCTCTCTCTTGGCA 43228 Query 452109 TTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAAC 452154 ||||| | | || || ||||| | || | ||| || |||||| Sbjct 43227 TTGAATTAACAGGAGGTGTGATGTCAAAGCTCATTGAA--AGGAAC 43184 >seq14889 Length=648006 Score = 84.2 bits (92), Expect = 9e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 ||| || ||||| || ||||||| || || || ||||||||| | || | || ||||| Sbjct 484853 AGTGACAGATGCCGTTGTTACTGTACCAGCCTACTTCAATGATTCCCAGAGACATGCAAC 484794 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 || ||||| || ||| |||| |||| | | || || || ||||||||||| || Sbjct 484793 AAAGGATGCTGGTGTTATCTCTGGCCTAAACATCTTGCGTATCATCAATGAACCTACTGC 484734 Query 451432 AGCTGCTCTAGCATATGGACT 451452 ||||||| | || ||||| || Sbjct 484733 AGCTGCTATTGCTTATGGTCT 484713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974910962786876