Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq26121 91.5 2e-13 seq26965 89.7 6e-13 >seq26121 Length=543453 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 102190 TCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGC 102249 |||| ||||| || ||||| ||||||||||| || || ||| ||| || | |||| Sbjct 57083 TCGCCTTTGCAGCAGTGGAGGGCATCTTCTTCTCAGGCTCTTTCGCCGCAATCTTCTGGC 57024 Query 102250 TCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACG 102309 ||||||||||||| |||||||| ||||| ||||||||| || || ||| | |||| Sbjct 57023 TCAAGAAGCGAGGACTCATGCCCGGTCTTACCTTCTCCAATGAACTCATCAGCAGAGACG 56964 Query 102310 AGG 102312 ||| Sbjct 56963 AGG 56961 >seq26965 Length=571932 Score = 89.7 bits (98), Expect = 6e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 102167 ||||| |||| | | | |||||||| || |||||| |||||||| | | || | | Sbjct 62736 ACAGTGCCATTTGTGAAGAAGAAAGCAGACTGGGCTTTGAAGTGGATAGCATCAGATGAG 62677 Query 102168 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 102227 | |||| |||||| || | | |||||||| || || || ||||||||||| || Sbjct 62676 AGCACCTTCGCTGAGAGATTGGTTGCATTTGCTGCAGTGGAAGGAATCTTCTTCTCAGGA 62617 Query 102228 TCCTTCTGC-GCTATTTATTGGCTCAAGAAGCG 102259 ||||| ||| ||||||| |||| |||||||||| Sbjct 62616 TCCTT-TGCTGCTATTTTTTGGTTCAAGAAGCG 62585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620494902245840