Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq26231 86.0 4e-12 >seq26231 Length=1354672 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || |||| || || || || || ||||| Sbjct 554529 TCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAG 554470 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | || || ||||| ||||| || ||| Sbjct 554469 ATGAGACGCTGCTGATCGGGAGGGATGCCTTCTTTGTCCTGGATCTTGGCCTTTACGTTC 554410 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || || |||| | ||| || |||| || |||||||| || ||||| ||||| || Sbjct 554409 TCGATGGAATCACTTGGCTCGACCTCGAGTGTGATGGTTTTGCCTGTGAGGGTCTTGACG 554350 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 554349 AAGATCTGCATA 554338 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| |||||||| || | || |||| || || || || || || || || Sbjct 550947 TTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATG 550888 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || ||||| || | || | || || ||||| ||||| || ||| | Sbjct 550887 AGACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTTACGTTCTCG 550828 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 || || |||| | ||| || |||| || ||||| || || ||||| ||||| |||||| Sbjct 550827 ATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAG 550768 Query 34974 ATCTGCATATT 34984 |||||||| || Sbjct 550767 ATCTGCATGTT 550757 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/211 (69%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 34775 CAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 |||| |||| |||| || ||||| ||||| ||||| || || | || |||| || | Sbjct 552266 CAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCAA 552207 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893 | || || || || || || || || ||||| || | || | || || ||||| | Sbjct 552206 GTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCTTCTTTGTCCTGGA 552147 Query 34894 TCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 |||| || ||| | || || |||| | ||| || |||| || ||||| || | Sbjct 552146 TCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTTGC 552087 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | ||||| ||||| |||||||||||||| || Sbjct 552086 CGGTGAGGGTCTTGACAAAGATCTGCATGTT 552056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324507400412616