Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_015456.1 Length=50661 Score E Sequences producing significant alignments: (Bits) Value seq28821 1110 0.0 >seq28821 Length=465073 Score = 1110 bits (1230), Expect = 0.0 Identities = 712/775 (92%), Gaps = 1/775 (0%) Strand=Plus/Minus Query 213 TAATTATATTGTAACAGCTGTGTATAGCTGTCTTACATTGTCTAGCGTACTGTTGGCATA 272 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 123324 TAATTATATTGTAATAGTTGTGTATAGCTGTCTTACATTGTCTAGCGTACTGTTGGCATA 123265 Query 273 TTTCTATCTGCATGTTTATATATACAGTACTTTTTTGG-GAGCTATATATTTCTATAGTG 331 |||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||| Sbjct 123264 TTTCTATCTGCATGTTTATATATACAGTACTTTTTTTGAGAGCCATATATTTCTATAGTG 123205 Query 332 ACTCTATACAGCTAGACAAATGTTACACGGCTTAAAATTGGCTCTCAGGCGTTGACGTAT 391 || || ||||||||||||||||||||||||||||||||||||| ||||| ||||| | Sbjct 123204 GCTATAGACAGCTAGACAAATGTTACACGGCTTAAAATTGGCTCGCAGGCATTGACAGCT 123145 Query 392 CTGCATTGCGCTGTCACAATGGCAATTGTTGACACGTTATGACACCATTTACACACGAAT 451 || ||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 123144 CTACATCGCGATGTCACAATGGCAATTGTTGACACATTATGACACCATTTACACACGAAT 123085 Query 452 AGACAAAGAGGTTATATTATGAGCAATACCAATCAGGAATTAAAAATCACCGACATGATT 511 ||||||||||| ||||||||||||||||||| |||||| |||||||||||||| |||||| Sbjct 123084 AGACAAAGAGGATATATTATGAGCAATACCAGTCAGGAGTTAAAAATCACCGATATGATT 123025 Query 512 CGCCTAACCTGCGACGCAATGTATCGCGACAAGGGCATGAGTGAGTTCTCTTTCGTGGCT 571 |||||||||||||| |||||||| |||||||| ||||||| ||||||||||||||||||| Sbjct 123024 CGCCTAACCTGCGATGCAATGTACCGCGACAAAGGCATGAATGAGTTCTCTTTCGTGGCT 122965 Query 572 GATGATATGGCCCTGGAAGGCGCGCGATTCTATTTCCGCAATCAGGATGTAAGCGATAGC 631 |||||||||||||| || | |||||||||||| ||||| | ||||| ||||| ||| | Sbjct 122964 GATGATATGGCCCTCGAGGCCGCGCGATTCTACTTCCGTGACCAGGAGGTAAGTGATGAC 122905 Query 632 GATCTTGAGTCTGCCGCTGCCGGATGGGTGGACCAGAACCAGGGGGAGGTAGAGAAGCGA 691 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 122904 GATCTTGAATCTGCCGCTGCCGGATGGGTGGACCAGAACCAGGGGGAGGTAGAGAAGCGA 122845 Query 692 TTCAAGTCTGCTTTCATCACTCCGATCATTACCAGGCACTTCTGCAAGTATGGCAAGGTA 751 |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 122844 TTCAAGTCCGCTTTCATCACTCCGATCATTACCAGGCACTTTTGCAAGTATGGCAAGGTG 122785 Query 752 GCAAAGGTGAAGGTAGGCCGAAATGACGCAGCAATCACAATGATAACGGTTATCGTTACA 811 |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 122784 GCAAAGGTGAAGGTAGGCCGGAATGACGCTGCAATCACAATGATAACGGTTATCGTTACC 122725 Query 812 GACGAAGAGGTTCCTGTGAAGAAGCGCCGCAGTCGGAAAAAAGTTAGCCTGGCCGACTGC 871 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 122724 GACGAAGAGGTTCCCGTGAAGAAGCGCCGCAGTCGGAAAAAAGTTAGCCTGGCCGATTGC 122665 Query 872 CTGGATTCTTTTGACGTTGATGTTAGTAAGCTGGGCGATAGTGAACTGATGGTTCGTGAT 931 |||||||| |||| |||||||| | || |||| ||||| ||| ||||| |||||| Sbjct 122664 CTGGATTCGTTTGTGGTTGATGTGGGCAAACTGGCTGATAGCGAATTGATGACTCGTGAC 122605 Query 932 GTAAATGAGATCGTGCGCCAGATGAAAGCGCATATCGAAAAGTGCGGACTGTGAG 986 ||||| |||||||| ||||||||||||||||||||||||||||| ||||||| || Sbjct 122604 GTAAACGAGATCGTTCGCCAGATGAAAGCGCATATCGAAAAGTGTGGACTGTAAG 122550 Score = 746 bits (826), Expect = 0.0 Identities = 518/584 (89%), Gaps = 4/584 (1%) Strand=Plus/Minus Query 49667 TCTCTCCGGCATGACAAAATCGTCCGAGGTCCAAAGGCACGTCTTTTTCGGGTAAGCATC 49726 |||||||||||| || || ||||| |||||||| || || ||||| |||||||||||||| Sbjct 124321 TCTCTCCGGCATAACGAAGTCGTCAGAGGTCCACAGACAAGTCTTCTTCGGGTAAGCATC 124262 Query 49727 GCGCGGCGCAATATACATAGGGAACCAGGGATGTGAGTCATTCTCAGGAAGGTAGCCGCC 49786 ||||||||| |||||||| |||||||||||||| | ||||||||||||||| |||||||| Sbjct 124261 GCGCGGCGCGATATACATCGGGAACCAGGGATGCGCGTCATTCTCAGGAAGATAGCCGCC 124202 Query 49787 ATACTCCCAGGGATTGAATGAGTGATCTGGTTTTCTCCAGGCAGATGACAGGACGCTAAC 49846 |||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| || Sbjct 124201 ATACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCATGCAGATGACAGGACGCTCAC 124142 Query 49847 CGGATTCTCAATGATGTAGGTCACGCCCAGGGCATCGCCAATATTCGCAGCAATCCGTGC 49906 |||||||||||| ||||| |||||||||| | ||||||||| ||||| ||||| || || Sbjct 124141 CGGATTCTCAATTATGTAAGTCACGCCCATGCTATCGCCAATGTTCGCGGCAATACGGGC 124082 Query 49907 GGTTGCAACAGCCTTCTCCTGGAATAACGGATCGCGCTCACGCTTACTTGCAAAGTGCGC 49966 || || ||||| ||||||||||||| |||||| || |||||||| || ||||| || || Sbjct 124081 AGTAGCGACAGCTTTCTCCTGGAATAGCGGATCACGTTCACGCTTGCTGGCAAAATG-GC 124023 Query 49967 G-GCACCACTAACAGCCAGGTCGGTGCATGGAGGAAATGCCATGATGAAATCTGGCTTGC 50025 | |||||||||||||| ||||| ||||||||| | || ||||| || ||||| || ||| Sbjct 124022 GAGCACCACTAACAGCAAGGTCAGTGCATGGATGGAAGGCCATAATAAAATCCGGTTTGT 123963 Query 50026 CATACACACCCGCGATCGCATCACGTTCGAACTTCTCATCAATGAAGACGTTCACATACT 50085 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 123962 CATACACACCCGCGATCGTATCACGTTCGAACTTCTCATCAATGAAGACGTTCACATACT 123903 Query 50086 CAATATTCGGATGCTCTACCCGGGCGTTGTACTTTGCATAATCTCCGTGATCGGCCCCGT 50145 |||| |||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| Sbjct 123902 CAATGTTCGGATGCTCTACCCTGGCGTTGTACTTTGCGTAATCTCCGTGATCGGCTCCGT 123843 Query 50146 CAAAGTTGAAGCACATTACCTTATGACCTCGCTTAGCCAGTTCATGACCAGCAAGGCCGG 50205 |||||||||||||||| |||||||||||| |||| ||||||||||| |||||||| |||| Sbjct 123842 CAAAGTTGAAGCACATCACCTTATGACCTTGCTTTGCCAGTTCATGGCCAGCAAGACCGG 123783 Query 50206 AGCCATCGAATAATGACCAGATTAATTTCATTTCGTTACCTCCT 50249 | || ||||||| |||||| |||||||||||| || || |||| Sbjct 123782 AACCGTCGAATAGTGACCAAATTAATTTCATT--GTGACTTCCT 123741 Score = 291 bits (322), Expect = 3e-74 Identities = 190/208 (91%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 50454 TCCTCTGATTGGTTGATGTGATGAATCATACCCTGCCAACATGGATAAGTCGTTAGCAAA 50513 || ||||||||||||||| ||| |||||||| |||| ||| ||||||||||||| Sbjct 123741 TCTTCTGATTGGTTGATGGCCCGAACTATACCCTGTCAACCTGGTCGAGTCGTTAGCAAA 123682 Query 50514 AAATGCTATTCCAATAGTTGCTCATTATTCCATCAATACTGGAATAGTTGGAATAATTTT 50573 || ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 123681 AA-TGCTATTCCAATAATTGCTCATTATTCCATCAATACTGGAATAGGTGGAATAATTTT 123623 Query 50574 GATTGTGATTGATTGCGAATGATGAAACGTGATTATTGCATGATGTGCAACAGTTGTTTG 50633 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 123622 GATTGTTATTGATTGCGAATGATGAAACGTGATTATTGCATGGTGTGCAACAGTTGGTTG 123563 Query 50634 ATTTGTTGCTGAGATTGCAATGATTGTG 50661 |||||||||||||||||||||||||||| Sbjct 123562 ATTTGTTGCTGAGATTGCAATGATTGTG 123535 Score = 230 bits (254), Expect = 8e-56 Identities = 138/145 (95%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 1 AGAGGGAGGATCTGGTGTTACCCGGTTCGCCTGGTAGTCATCTCCATTTTTAGCAAAAAG 60 ||||||||||| | ||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 123534 AGAGGGAGGATTTAGTGTTGCCCTGTTCGCCTGGTAGTCATCTCCATTTTTAGCAAAAAG 123475 Query 61 TGCTATCGATTACACTTTAACTTGTCACGACTGTAATATTTGTCTAGAATCGCCATTGTG 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 123474 TGCTATCGATTACACTTTAACTTGTCACGACTGTAATATTTGTCTAGAATCGCACTTGTG 123415 Query 121 ACAAAATTACACACTGTGACGCCTC 145 |||||| |||||||||||||||||| Sbjct 123414 ACAAAAATACACACTGTGACGCCTC 123390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161932240570422