Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq26121 91.5 2e-13 >seq26121 Length=543453 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | |||||| || || || | ||| ||||| ||||||| || | Sbjct 56961 CCTCGTCTCTGCTGATGAGTTCATTGGAGAAGGTAAGACCGGGCATGAGTCCTCGCTTCT 57020 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| || | || || || || || ||||| || || || ||||||||||| | Sbjct 57021 TGAGCCAGAAGATTGCGGCGAAAGAGCCTGAGAAGAAGATGCCCTCCACTGCTGCAAAGG 57080 Query 19103 CAACTAGTCTTTCTCCATAACT-AGCATCATTATTATGAATCCATTTCAGTGCCCAATCA 19161 | || | || | ||| || | ||| | | | ||||| |||| ||||| | Sbjct 57081 CGAC-AATCCTCGTCCCAAAGTCAGCGCTGTCACTGCCGATCCAGTTCAAAGCCCACTGT 57139 Query 19162 GCCTTCTTTTTTACACATGGCATTGTCTC 19190 || ||||| |||| ||||||| ||||| Sbjct 57140 GCTTTCTTGGTTACGCATGGCAACGTCTC 57168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561884680195080