Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq31154 120 2e-22 seq2070 120 2e-22 seq27420 111 1e-19 >seq31154 Length=245217 Score = 120 bits (132), Expect = 2e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 29800 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 29859 || || ||||| | ||||| || || || || || || |||| |||||| ||||| ||| Sbjct 181060 TTGAGTGGTTCGATGTGATTGAGATACACATGCGCATCACCCAAGGTGTGCACAAAATCT 181001 Query 29860 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29919 || |||| || || || || ||||| |||||||| |||||||||||||| ||||||||| Sbjct 181000 CCTGGTTTGAGACCAGTCACATGAGCAATCATGTATGTGAGGAGAGAGTAACTGGCGATG 180941 Query 29920 TTAAAGGGTACCCCGAGCCCC 29940 || ||||| || || || ||| Sbjct 180940 TTGAAGGGCACTCCCAGACCC 180920 >seq2070 Length=221348 Score = 120 bits (132), Expect = 2e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 29800 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 29859 ||||| ||||| | ||||| || || || || || || |||| |||||| ||||| ||| Sbjct 201436 TTCAGTGGTTCGATGTGATTGAGATACACATGCGCATCACCCAAGGTGTGCACAAAATCT 201495 Query 29860 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29919 || |||| || || || || ||||| |||||||| |||||||||||||| ||||||||| Sbjct 201496 CCTGGTTTGAGGCCAGTCACATGAGCAATCATGTATGTGAGGAGAGAGTAACTGGCGATG 201555 Query 29920 TTAAAGGGTACCCCGAGCCCC 29940 || || || || || || ||| Sbjct 201556 TTGAAAGGCACTCCCAGACCC 201576 >seq27420 Length=320187 Score = 111 bits (122), Expect = 1e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 29800 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 29859 || || ||||| ||||| || || || || || || |||| |||||| ||||| ||| Sbjct 118969 TTGAGTGGTTCGGTGTGATTGAGATACACATGCGCATCACCCAAGGTGTGCACAAAATCT 119028 Query 29860 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29919 || |||| || || || || ||||| |||||||| |||||||||||||| ||||||||| Sbjct 119029 CCTGGTTTGAGGCCAGTCACATGAGCAATCATGTATGTGAGGAGAGAGTAACTGGCGATG 119088 Query 29920 TTAAAGGGTACCCCGAGCCCC 29940 || || || || || || ||| Sbjct 119089 TTGAAAGGCACTCCCAGACCC 119109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408458752078781