Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_018085.1 Length=41992 Score E Sequences producing significant alignments: (Bits) Value seq21096 513 4e-141 >seq21096 Length=1089 Score = 513 bits (568), Expect = 4e-141 Identities = 586/775 (76%), Gaps = 19/775 (2%) Strand=Plus/Plus Query 12348 AAAAGGTAAAAGAAGATTTAGCGGATTGGCTTTATACAGAGCAACC-TGCTGAACTTGTT 12406 |||| |||||||||| |||| |||||||| ||| || ||||| ||| || ||| || Sbjct 325 AAAAACTAAAAGAAGAAATAGCAGATTGGCTCGTTACGGATCAACCGTGC-GAGCTTATT 383 Query 12407 TTTGATGATGAATTAGATAGGACTTATCTAGCATTAATCGATGGTTCTGTTGACTTGGAT 12466 |||||||||||| |||| | || | | |||| | | |||| || | || || || Sbjct 384 TTTGATGATGAAAAAGATCGTACGTTTTTAGCTGTCGTAGATGAAACTTTAGATTTAGAG 443 Query 12467 GAAATAATTAATAGAGGTAAAGGCGTTATTACTTTTGTTTGTCCAATGCCATATAAATTA 12526 | || || || |||| |||| | | ||||| ||||||||||||||||||| ||| Sbjct 444 CAGTTAGTTGATCTAGGTGAAGGTACTTTAACTTTCATTTGTCCAATGCCATATAAGTTA 503 Query 12527 GGAAAACAAAATATTCACACGTT---CTCTCAAAAAGGTGATACTGAAGTTACAA-CTTC 12582 |||||| | || ||| | || | |||||| || || || |||| || Sbjct 504 GGAAAAGAG------CAAACGGTTGACTTTAAAAAAGATGTTAGTGG-GTTAGTTGCTAA 556 Query 12583 TTTTATTAATCAAGGGAATATAGAAGCACCTCCAATTATTGAAATCGA-AGCACAGAAAC 12641 | | ||| |||| | | | | | || || ||||| || || | || ||||| Sbjct 557 TGTCCAAAATAAAGGAACTGTTCATTCTAACCCTATCATTGAGATTGATATTAC-GAAAC 615 Query 12642 CAAGTACATTTTTAGATGTGTGGTTTGGTGAG-TCCCCTTA--TAATCGTGATTACTTCA 12698 ||| ||| ||| |||| || ||||| || | | | | ||| | |||| ||||| || Sbjct 616 CAAATACTTTTCTAGACGTATGGTTCGGCGGGGTATCTTTAAGTGATCGAGATTATTTTC 675 Query 12699 GAATCGGTTATCCCTTAAAAACAGAGCAACTACCTGTCGAAAGAAATCAAAGGCTTATAT 12758 | |||||| || ||||||| | | || ||||| ||||| |||||| | | ||| Sbjct 676 GTATCGGTATGCCACTAAAAACTGTGGAAAAGCCTGTAGAAAGGAATCAACGTATATTAT 735 Query 12759 GGGATGAAATGGCTACCACTGTAGGTTGGAGTAAAGTCAGTTCAATGGAAGATGGTGATC 12818 |||||||||||||||| || || || |||||||||||||| |||||||||||||| || | Sbjct 736 GGGATGAAATGGCTACTACGGTCGGATGGAGTAAAGTCAGCTCAATGGAAGATGGGGAAC 795 Query 12819 CGGTTGGTGAAATGAAGTCCGATAAATACCAATTCTATTGTTCTGATTTTGGTACCAGTA 12878 |||||||||||||||| || |||||||| ||||| |||||||| |||||||| || | | Sbjct 796 CGGTTGGTGAAATGAAATCAGATAAATATCAATTTTATTGTTCCGATTTTGGAACTGGAA 855 Query 12879 CAAGCAAAGGATGGCATGGTGCAGCTGTTaaaaaaaaTATACCTGGCGGTCCAGTACAAG 12938 | | ||||||||||| ||||||||||||||||||| ||| ||||| || ||||| |||| Sbjct 856 CGGGAAAAGGATGGCACGGTGCAGCTGTTAAAAAAAGTATCCCTGGTGGCCCAGTGCAAG 915 Query 12939 ATTTCATTATGCAAGCTTATGTTACATGTAAGAGTAAAAAGATTAATGAAATGGGCCGAG 12998 |||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| || | Sbjct 916 ATTTTATTATGCAAGCCTATGTTACATGTAAGAGTAAAAAGATTAACGAAATGGGACGGG 975 Query 12999 TGGAGATAGCGATACTTGATGAAAATAGCAAGGTTCTTTCAAAAATTGCTATGAACGACC 13058 | |||||||||||||| |||||||| || || || ||||| ||||| ||||||| || Sbjct 976 TTGAGATAGCGATACTCGATGAAAACAGTAAAGTGCTTTCGAAAATAGCTATGACTGATG 1035 Query 13059 TCTTTTGGCAAGCTGAACAAAATTTCGGAACGATGGTTATTGGATATGATAACAA 13113 | ||||||||||||| |||||| |||||||| ||||| || || |||||||| || Sbjct 1036 TGTTTTGGCAAGCTG-ACAAAACTTCGGAACAATGGTAATCGGTTATGATAATAA 1089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134201948143956