Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_018277.1 Length=42784 Score E Sequences producing significant alignments: (Bits) Value seq21096 1169 0.0 >seq21096 Length=1089 Score = 1169 bits (1296), Expect = 0.0 Identities = 917/1092 (84%), Gaps = 12/1092 (1%) Strand=Plus/Plus Query 12729 TTTGCAAGTTAATTTAAACGGCAGAGAAATAGCAAAGG-AAATCTACTCAGATGTTAGTA 12787 ||| ||| ||||||||||||| ||||||||||| |||| |||| ||||||||||| | | Sbjct 1 TTTACAAATTAATTTAAACGGAAGAGAAATAGCGAAGGGAAATTTACTCAGATGTCAATG 60 Query 12788 AGTTTCAAGAAAGCGAGAAAGAAAGATTGAAAGTATTTTAGGTAGGTGATGATATGACTG 12847 | ||||||||| |||||||||||||| | ||||||||||||||||||||||||||| | | Sbjct 61 AATTTCAAGAACGCGAGAAAGAAAGACTCAAAGTATTTTAGGTAGGTGATGATATGGCGG 120 Query 12848 GAATCAGTTTCTTTAGTTTTAACGGGAAAAGAAATTCAAATGTAATCCCATTGCAGGGTA 12907 |||| || ||||||||||||||||||||||| ||| |||||||||| ||| ||||||||| Sbjct 121 GAATTAGCTTCTTTAGTTTTAACGGGAAAAGGAATCCAAATGTAATTCCACTGCAGGGTA 180 Query 12908 AAAAACGCCCTGCATGGGCTCCTTTGGAACGTACATTCCTTGAAGTCCCTCACTATCCAG 12967 |||| ||||||||||||||||||||||| | || || ||||||||| | || ||||||| Sbjct 181 AAAAGCGCCCTGCATGGGCTCCTTTGGATCATATGTTTCTTGAAGTCTCGCATTATCCAG 240 Query 12968 GTGGGCGTTTGATAAGAACACAAACAAAAATGAGAAAAATAATTATACCGGTTGCATTAT 13027 | || | || || | |||||||| ||||||||||| || | | || ||||| ||| Sbjct 241 GAGGTAGGTTACTACGCACACAAACTAAAATGAGAAAGATTTTAGTTCCTATTGCACTAT 300 Query 13028 TTTATGAATCTATGGAAGAGGCTGAAAAGTTAAAGGAAGAAATAGCTAATTGGCTTATTA 13087 | ||||| || ||||| |||||||| |||| ||||||||||| ||||||| ||| Sbjct 301 TATATGACTCAGCTGAAGAAGCTGAAAAACTAAAAGAAGAAATAGCAGATTGGCTCGTTA 360 Query 13088 CAGATCAACCTCAAGAACTGATCTTTGATGATGAAAAAGATCGCACGTATTTGGCCCTTA 13147 | |||||||| || || || |||||||||||||||||||| |||| ||| || | Sbjct 361 CGGATCAACCGTGCGAGCTTATTTTTGATGATGAAAAAGATCGTACGTTTTTAGCTGTCG 420 Query 13148 TTGATGAATCGTTTGACCCACAGCAATTAGTGAATTTAGGAGAAGGAGTCCTT--ACTTT 13205 | |||||| | || || | |||| ||||| || |||| |||| || ||| ||||| Sbjct 421 TAGATGAAACTTTAGATTTAGAGCAGTTAGTTGATCTAGGTGAAG--GTACTTTAACTTT 478 Query 13206 TGTTTGTGAAATGCCATATAAGTTAGGACCTACTAAAACGGTAGAATTTGAAATGGATGG 13265 ||||| ||||||||||||||||||| ||||||| || ||| ||| |||| Sbjct 479 CATTTGTCCAATGCCATATAAGTTAGGAAAAGAGCAAACGGTTGACTTTAAAAAAGATGT 538 Query 13266 ACGTGGGTTAATAGCAAATGTTCAAAATAAAGGTACTGTTCATTCTAATCCTATAATTGA 13325 |||||||| | || ||||| ||||||||||| |||||||||||||| ||||| ||||| Sbjct 539 TAGTGGGTTAGTTGCTAATGTCCAAAATAAAGGAACTGTTCATTCTAACCCTATCATTGA 598 Query 13326 GATTGAAATTACGAAACCGAACACTTTTTTAGATGTATGGTTTGGTGGGGTATCTTTAAG 13385 |||||| ||||||||||| || |||||| |||| |||||||| || |||||||||||||| Sbjct 599 GATTGATATTACGAAACCAAATACTTTTCTAGACGTATGGTTCGGCGGGGTATCTTTAAG 658 Query 13386 TGATCGAGATTATTTTCGTATTGGGATGCCGCTAAAAACTGTGGAAAAGCCTGTAGAAAG 13445 ||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct 659 TGATCGAGATTATTTTCGTATCGGTATGCCACTAAAAACTGTGGAAAAGCCTGTAGAAAG 718 Query 13446 GAATCAAAGGCTTATATGGGATGAAATGGCCACTACGGTCGGATGGAGTAAAGTCAGCTC 13505 ||||||| | | |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 719 GAATCAACGTATATTATGGGATGAAATGGCTACTACGGTCGGATGGAGTAAAGTCAGCTC 778 Query 13506 AATGGAAGATGGGGAACCGGTTGGTGAAATGAAATCAGATAAATATCAATTTTATTGTTC 13565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 AATGGAAGATGGGGAACCGGTTGGTGAAATGAAATCAGATAAATATCAATTTTATTGTTC 838 Query 13566 TGATTT------TGGAACGGGAAAAGGATGGCACGGTGCAGCTGTTaaaaaaaGTATCCC 13619 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 CGATTTTGGAACTGGAACGGGAAAAGGATGGCACGGTGCAGCTGTTAAAAAAAGTATCCC 898 Query 13620 TGGTGGCCCAGTAGAAGATTTTATCATGCAAGCTTACGTTACTTGTAAGAGCAAGAAAAT 13679 |||||||||||| |||||||||| |||||||| || ||||| |||||||| || || || Sbjct 899 TGGTGGCCCAGTGCAAGATTTTATTATGCAAGCCTATGTTACATGTAAGAGTAAAAAGAT 958 Query 13680 CAATGAAATGGGACGAGTTGAGATAGCGATACTCGATGAAAACAGTAAAGTTCTTTCAAA 13739 || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || Sbjct 959 TAACGAAATGGGACGGGTTGAGATAGCGATACTCGATGAAAACAGTAAAGTGCTTTCGAA 1018 Query 13740 AATTGCCATGAACGATCTCTATTGGCAAGCCGAACAAAATTTTGGAACGATGGTTATTGG 13799 ||| || |||| ||| | | ||||||||| | |||||| || ||||| ||||| || || Sbjct 1019 AATAGCTATGACTGATGTGTTTTGGCAAGCTG-ACAAAACTTCGGAACAATGGTAATCGG 1077 Query 13800 ATACGATAACAA 13811 || ||||| || Sbjct 1078 TTATGATAATAA 1089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136735388171844