Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq26121 136 7e-27 seq29598 104 4e-17 seq14812 100 5e-16 >seq26121 Length=543453 Score = 136 bits (150), Expect = 7e-27 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| | ||||||||| | ||||||||| ||||| ||||||| || | || ||| Sbjct 56963 TCGTCTCTGCTGATGAGTTCATTGGAGAAGGTAAGACCGGGCATGAGTCCTCGCTTCTTG 57022 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 |||||||| ||||| ||||||||||| ||||||||||||||||||||||| || || ||| Sbjct 57023 AGCCAGAAGATTGCGGCGAAAGAGCCTGAGAAGAAGATGCCCTCCACTGCTGCAAAGGCG 57082 Query 48275 GTGAGCCTCTCTCCGAAAG-AAGCGTTCTTGTCTG-AGATCCAGGAAAGCGCCCAGTCTG 48332 | |||| ||| |||| |||| | | ||| ||||||| | ||||| | || Sbjct 57083 ACAATCCTC-GTCCCAAAGTCAGCGCT-GTCACTGCCGATCCAGTTCAAAGCCCACTGTG 57140 Query 48333 CCTTCTTCTTGATGCATGGCATCGTCTC 48360 | ||||| | | |||||||| |||||| Sbjct 57141 CTTTCTTGGTTACGCATGGCAACGTCTC 57168 >seq29598 Length=358761 Score = 104 bits (114), Expect = 4e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960 || ||| | ||||| | |||||| || ||||| ||||| | | | ||| | ||| Sbjct 197308 AGATGATGATTGACCACCTGGAACTCTCCTGACAGCACACGGCGCGTGTAGATGTTACTC 197367 Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||| ||||||||| ||| ||||| ||||| ||||| || ||| || || |||||| Sbjct 197368 GTGTAAGGCTCGATGGCCTCATTGTTACCCAGGATCTGAGCGGTGGATGCGGTCGGCATG 197427 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATG 213062 ||||| | ||||||||||| | || ||||||| | ||||| Sbjct 197428 GGAGCAAGGAGGAGACTGTTTCGGACGCCGTGCTTGGCGATG 197469 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/185 (73%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 213775 ATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCG 213834 ||| ||| ||||| ||| ||||||| || ||| || || || | |||||| | || | Sbjct 200532 ATGAGGG-CACATCAGGGTCCAGTCTCCATCAGCTTCCACCCTTTTCATGAATAAATCTG 200590 Query 213835 GGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGC 213894 ||| ||| || || ||||||||||| | |||| ||| ||| || ||| || Sbjct 200591 GGATCCAGAGACCGTAGAACAGGTCCCGAGCCCTCTGCTCCTCCTTACCGTGGTTCTTCT 200650 Query 213895 G-CAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCG 213953 ||| ||||| |||||||||||||| || ||||||||||||| |||||| || || || Sbjct 200651 TACAG-TCTAGGAAGTCAAAGATGTCTGCATGCCACGGCTCCAGGTAGATTGCGAAAGCA 200709 Query 213954 CCCGG 213958 || || Sbjct 200710 CCAGG 200714 >seq14812 Length=166307 Score = 100 bits (110), Expect = 5e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||| | || || || || || || |||||| |||||| ||| |||| Sbjct 131090 TTCACTTTATCCTCTAACCTGGCAATACGCTCAAGCTTGCGCTTGCGGCACTTGCTGGCG 131149 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | || |||| ||| || || | || ||||||||||| ||||||| ||||||||| Sbjct 131150 GCGATTCGATTCCTGAGCCTTTTCCTCTCAGCCTTGATGCGCTCCTGGTTTTCCATGTCG 131209 Query 241619 ATCGGAGACTTGGGT 241633 || || ||| ||||| Sbjct 131210 ATGGGGGACATGGGT 131224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931161386228480