Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq26121 125 1e-23 seq29598 89.7 1e-12 >seq26121 Length=543453 Score = 125 bits (138), Expect = 1e-23 Identities = 141/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 25824 GAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCT 25883 ||| || | |||||| |||| |||||| ||| | |||||| ||||| | || | Sbjct 57145 GAAAGCACAGTGGGCTTTGAACTGGATCGGCAGTGACAGCGCTGACTTTGGGACGAGGAT 57086 Query 25884 GGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTG 25943 || |||||||| || |||||||||||||| ||| || || || || || |||||||| Sbjct 57085 TGTCGCCTTTGCAGCAGTGGAGGGCATCTTCTTCTCAGGCTCTTTCGCCGCAATCTTCTG 57026 Query 25944 GCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 ||||||| || | |||| ||||||||| || ||| ||||| || ||||||||||| | Sbjct 57025 GCTCAAGAAGC-GAGGACTCATGCCCGGTCTTACCTTCTCCAATGAACTCATCAGCAGAG 56967 Query 26003 ACGAGG 26008 |||||| Sbjct 56966 ACGAGG 56961 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| || ||||| ||||||||||| || |||||||| ||||| ||||||||||| ||| Sbjct 55764 AACCCATTTGACTTCATGGAAAACATCTCATTGGAAGGAAAGACAAACTTCTTTGAGAAG 55705 Query 26305 AGGGTCGGCGACTATCA 26321 ||||| || || || || Sbjct 55704 AGGGTTGGTGAATACCA 55688 >seq29598 Length=358761 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 221117 TTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGT 221176 || ||||| ||||| ||||| || ||||| | | | ||| | |||| ||| | || Sbjct 197317 TTGACCACCTGGAACTCTCCTGACAGCACACGGCGCGTGTAGATGTTACTCGTGTAAGGC 197376 Query 221177 TCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACC 221236 |||||| ||| ||||| |||||||||||||| ||| ||||| |||||||| || | Sbjct 197377 TCGATGGCCTCATTGTTACCCAGGATCTGAGCGGTGGATGCGGTCGGCATGGGAGCAAGG 197436 Query 221237 AGCAGACTGTTGCG 221250 || |||||||| || Sbjct 197437 AGGAGACTGTTTCG 197450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928474457967680