Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_019502.1 Length=44401 Score E Sequences producing significant alignments: (Bits) Value seq21096 547 2e-151 >seq21096 Length=1089 Score = 547 bits (606), Expect = 2e-151 Identities = 595/777 (77%), Gaps = 23/777 (3%) Strand=Plus/Plus Query 31432 AAAAGGTAAAAGAAGATTTGGCGGATTGGCTATATACAGAGCAACCAGCTGAACTTATTT 31491 |||| |||||||||| | || |||||||| ||| || ||||| || ||||||| Sbjct 325 AAAAACTAAAAGAAGAAATAGCAGATTGGCTCGTTACGGATCAACCGTGCGAGCTTATTT 384 Query 31492 TTGATGATGAGTTAGACAGGACTTATTTAGCATTAATTGATGGTTCTGTAGATTTGGACG 31551 |||||||||| ||| | || | |||||| | | |||| || ||||||| || Sbjct 385 TTGATGATGAAAAAGATCGTACGTTTTTAGCTGTCGTAGATGAAACTTTAGATTTAGAGC 444 Query 31552 AATTAGTGAATAGAGGTAAAGGGGTTATTACTTTTGTTTGTCCAATGCCATATAAATTAG 31611 | ||||| || |||| |||| | | ||||| ||||||||||||||||||| |||| Sbjct 445 AGTTAGTTGATCTAGGTGAAGGTACTTTAACTTTCATTTGTCCAATGCCATATAAGTTAG 504 Query 31612 GAAAACAAAATACTCATTCGTT--CTCTCAAAATGGTTCTACTGAAGTCACTGCTTCTTT 31669 ||||| | | || ||| || | |||| | | || || || | | | || Sbjct 505 GAAAAGAGCAAACG-----GTTGACTTTAAAAAAGATGTTAGTGG-GTTAGT--TGCTAA 556 Query 31670 TGTC---AATCAAGGGAATATAGAAGC--ACCTGCAATTATTGAAATCGA-AGCACAGAA 31723 |||| ||| |||| | | | | | ||| | || ||||| || || | || ||| Sbjct 557 TGTCCAAAATAAAGGAACTGTTCATTCTAACC--CTATCATTGAGATTGATATTAC-GAA 613 Query 31724 ACCAAGTACATTTTTAGATGTGTGGTTTGGTGAG-TATCCGTA--TAATCGAGATTACTT 31780 ||||| ||| ||| |||| || ||||| || | | |||| || | |||||||||| || Sbjct 614 ACCAAATACTTTTCTAGACGTATGGTTCGGCGGGGTATCTTTAAGTGATCGAGATTATTT 673 Query 31781 CAGAATTGGTTATCCTTTGAAAACAGAGCAATTACCCGTAGAAAGAAATCAAAGACTTAT 31840 | || ||| || | ||||| | | || || |||||||| |||||| | | | Sbjct 674 TCGTATCGGTATGCCACTAAAAACTGTGGAAAAGCCTGTAGAAAGGAATCAACGTATATT 733 Query 31841 ATGGGACGAAATGGCTACCACTGTAGGGTGGAGTAAAGTCAGTTCAATGGAAGATGGCAA 31900 |||||| ||||||||||| || || || |||||||||||||| |||||||||||||| | Sbjct 734 ATGGGATGAAATGGCTACTACGGTCGGATGGAGTAAAGTCAGCTCAATGGAAGATGGGGA 793 Query 31901 TCCGATTGGTGAAATGAAGTCAGATAAATATCAATTTTATTGTTCTGATTTTGGTACTAG 31960 ||| ||||||||||||| |||||||||||||||||||||||||| |||||||| ||| | Sbjct 794 ACCGGTTGGTGAAATGAAATCAGATAAATATCAATTTTATTGTTCCGATTTTGGAACTGG 853 Query 31961 TACGGGGAAAGGGTGGCACGGTGCGGCTGTTAAAAAGAATATCCCTGGGGGTCCAGTAGA 32020 ||||| ||||| ||||||||||| ||||||||||| | ||||||||| || ||||| | Sbjct 854 AACGGGAAAAGGATGGCACGGTGCAGCTGTTAAAAAAAGTATCCCTGGTGGCCCAGTGCA 913 Query 32021 AGATTTTATTATGCAAGCCTATGTTACATGTAAGAGTaaaaaaaTTAATGAAATGGGCCG 32080 |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || Sbjct 914 AGATTTTATTATGCAAGCCTATGTTACATGTAAGAGTAAAAAGATTAACGAAATGGGACG 973 Query 32081 TGTTGAGATAGCGATACTTGATGAAAATAGCAAGGTTCTTTCCAAAATCGCTATGAATGA 32140 ||||||||||||||||| |||||||| || || || ||||| ||||| ||||||| ||| Sbjct 974 GGTTGAGATAGCGATACTCGATGAAAACAGTAAAGTGCTTTCGAAAATAGCTATGACTGA 1033 Query 32141 TCTTTTTTGGCAAGCAGAGCAAAATTTCGGAACAATGGTAATTGGATATGATAATAA 32197 | | ||||||||||| || ||||| ||||||||||||||||| || ||||||||||| Sbjct 1034 TGTGTTTTGGCAAGCTGA-CAAAACTTCGGAACAATGGTAATCGGTTATGATAATAA 1089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141907828228782